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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013210
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 576 results. Now displaying 4 of 12 with 50 rows per page. This search has taken 6.285s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v2448220.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like isoform X1 [Cicer arietinum] gi|502129682|ref|XP_004500393.1| chr2 34598830 34608649 -
2 domain predictions
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Lj2g3v2736520.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357492663|ref|XP_003616620.1| chr2 36318689 36319986 +
2 domain predictions
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Lj2g3v2794510.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max] gi|356551399|ref|XP_003544063.1| chr2 36774910 36779183 -
2 domain predictions
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Lj2g3v2794510.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max] gi|356551399|ref|XP_003544063.1| chr2 36774910 36779278 -
2 domain predictions
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Lj2g3v2843040.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Cicer arietinum] gi|502097475|ref|XP_004491002.1| chr2 36979496 36982698 -
2 domain predictions
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Lj2g3v2904830.1
n.a. CM0545.400.nc [Lotus japonicus] gi|164605529|dbj|BAF98595.1| chr2 37945168 37947921 +
2 domain predictions
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Lj2g3v2904840.1
n.a. CM0545.410.nc [Lotus japonicus] gi|164605528|dbj|BAF98594.1| chr2 37950408 37951388 +
2 domain predictions
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Lj2g3v2904860.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357493511|ref|XP_003617044.1| chr2 37956427 37959713 +
2 domain predictions
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Lj2g3v2974840.1
n.a. PREDICTED: probable inactive receptor kinase At5g10020-like [Glycine max] gi|356553668|ref|XP_003545175.1| chr2 38456398 38459648 -
2 domain predictions
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Lj2g3v2984880.1
n.a. PREDICTED: probable inactive receptor kinase At5g10020-like [Glycine max] gi|356499271|ref|XP_003518465.1| chr2 38477835 38483383 +
2 domain predictions
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Lj2g3v2984880.2
n.a. PREDICTED: probable inactive receptor kinase At5g10020-like [Glycine max] gi|356499271|ref|XP_003518465.1| chr2 38478010 38485134 +
2 domain predictions
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Lj2g3v2985960.1
n.a. somatic embryogenesis receptor kinase 1-like precursor [Glycine max] gi|359807462|ref|NP_001241394.1| chr2 38538567 38541940 -
2 domain predictions
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Lj2g3v3223910.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356561446|ref|XP_003548992.1| chr2 41179304 41182739 +
2 domain predictions
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Lj2g3v3223950.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357492251|ref|XP_003616414.1| chr2 41185140 41188544 +
2 domain predictions
 –
Lj2g3v3223970.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357495155|ref|XP_003617866.1| chr2 41195118 41197721 +
2 domain predictions
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Lj2g3v3318890.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Cicer arietinum] gi|502129028|ref|XP_004500157.1| chr2 41953060 41957456 +
2 domain predictions
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Lj2g3v3337190.1
n.a. PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum] gi|502170479|ref|XP_004514841.1| chr2 42292558 42294355 +
2 domain predictions
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Lj3g3v0478120.1
n.a. PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum] gi|502157974|ref|XP_004510977.1| chr3 5510240 5511987 +
2 domain predictions
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Lj3g3v0948330.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357436695|ref|XP_003588623.1| chr3 11667085 11668417 +
2 domain predictions
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Lj3g3v0999850.2
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230-like [Glycine max] gi|356555150|ref|XP_003545899.1| chr3 13340877 13345645 +
2 domain predictions
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Lj3g3v1239980.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542792|ref|XP_003539849.1| chr3 16187174 16191539 -
2 domain predictions
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Lj3g3v1261130.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542042|ref|XP_003539480.1| chr3 16271690 16275645 -
2 domain predictions
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Lj3g3v1381520.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Cicer arietinum] gi|502119158|ref|XP_004496523.1| chr3 17700086 17703769 -
2 domain predictions
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Lj3g3v1716740.1
n.a. DNA-damage-repair/toleration protein DRT100-like precursor [Glycine max] gi|359806061|ref|NP_001240925.1| chr3 21676267 21677935 -
2 domain predictions
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Lj3g3v1933090.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1-like [Cicer arietinum] gi|502152677|ref|XP_004509039.1| chr3 24933513 24937680 +
2 domain predictions
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Lj3g3v2442070.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max] gi|356544283|ref|XP_003540583.1| chr3 30192898 30200838 +
2 domain predictions
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Lj3g3v2532280.1
n.a. PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] gi|356504209|ref|XP_003520891.1| chr3 31099681 31100442 +
2 domain predictions
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Lj3g3v2780560.1
n.a. PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Glycine max] gi|356547026|ref|XP_003541919.1| chr3 34202739 34210328 -
2 domain predictions
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Lj3g3v2823250.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356515144|ref|XP_003526261.1| chr3 34732287 34735805 +
2 domain predictions
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Lj3g3v2823260.1
n.a. n.a. chr3 34732287 34735182 -
2 domain predictions
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Lj3g3v2861380.1
n.a. PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Cicer arietinum] gi|502148542|ref|XP_004507203.1| chr3 35334301 35341914 +
2 domain predictions
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Lj3g3v2948570.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542792|ref|XP_003539849.1| chr3 36724223 36728588 +
2 domain predictions
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Lj3g3v3246320.1
n.a. PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum] gi|502148362|ref|XP_004507136.1| chr3 40097445 40098908 -
2 domain predictions
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Lj3g3v3246330.1
n.a. PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum] gi|502148302|ref|XP_004507113.1| chr3 40101159 40102888 -
2 domain predictions
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Lj3g3v3348680.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max] gi|356509565|ref|XP_003523518.1| chr3 41158487 41164700 -
2 domain predictions
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Lj3g3v3375780.1
n.a. hypernodulation aberrant root formation protein [Lotus japonicus] gi|24940156|emb|CAD42335.1| chr3 41520707 41525609 +
2 domain predictions
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Lj3g3v3500180.1
n.a. PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630-like [Cicer arietinum] gi|502144834|ref|XP_004505766.1| chr3 42560340 42566380 +
2 domain predictions
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Lj3g3v3724460.1
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Glycine max] gi|356542427|ref|XP_003539668.1| chr3 45091580 45097818 -
2 domain predictions
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Lj3g3v3752260.1
n.a. receptor-like protein kinase HSL1-like [Glycine max] gi|359807055|ref|NP_001241340.1| chr3 45418191 45423324 +
2 domain predictions
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Lj4g3v0189790.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max] gi|356510820|ref|XP_003524132.1| chr4 2366534 2371382 -
2 domain predictions
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Lj4g3v0333690.1
n.a. polygalacturonase inhibiting protein precursor [Phaseolus vulgaris] gi|55859505|emb|CAI11358.1| chr4 3746860 3747761 -
2 domain predictions
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Lj4g3v0333700.1
n.a. PREDICTED: polygalacturonase inhibitor 2 [Glycine max] gi|356524898|ref|XP_003531065.1| chr4 3750003 3751529 -
2 domain predictions
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Lj4g3v0338120.1
n.a. PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform 1 [Glycine max] gi|356558614|ref|XP_003547599.1| chr4 4277125 4280638 +
2 domain predictions
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Lj4g3v0423040.1
n.a. PREDICTED: receptor-like protein kinase 5-like [Vitis vinifera] gi|225470187|ref|XP_002268274.1| chr4 5588422 5591641 +
2 domain predictions
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Lj4g3v0450430.1
n.a. PREDICTED: receptor-like protein kinase 5-like [Vitis vinifera] gi|225470187|ref|XP_002268274.1| chr4 6298559 6307394 -
2 domain predictions
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Lj4g3v0473090.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51860-like [Glycine max] gi|356519607|ref|XP_003528463.1| chr4 7160660 7167790 +
2 domain predictions
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Lj4g3v0484420.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Cicer arietinum] gi|502142762|ref|XP_004505098.1| chr4 7718119 7722163 +
2 domain predictions
 –
Lj4g3v0484430.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Cicer arietinum] gi|502142762|ref|XP_004505098.1| chr4 7718119 7722443 +
2 domain predictions
 –
Lj4g3v0620740.1
n.a. leucine-rich repeat-like protein [Stylosanthes hamata] gi|157098061|gb|ABV23277.1| chr4 9741758 9744134 -
2 domain predictions
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Lj4g3v1120510.1
n.a. Receptor-like protein kinase HAIKU2 [Medicago truncatula] gi|357446137|ref|XP_003593346.1| chr4 16859760 16863913 +
2 domain predictions
 –