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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001650
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 509 results. Now displaying 2 of 11 with 50 rows per page. This search has taken 6.286s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0359079.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Glycine max] gi|356535071|ref|XP_003536072.1| chr0 189029473 189030811 +
3 domain predictions
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Lj0g3v0359079.2
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Glycine max] gi|356535071|ref|XP_003536072.1| chr0 189029473 189031408 +
3 domain predictions
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Lj0g3v0361239.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like isoform X1 [Cicer arietinum] gi|502076924|ref|XP_004485495.1| chr0 190278308 190283531 -
4 domain predictions
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Lj1g3v0013390.1
n.a. PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum] gi|502158798|ref|XP_004511285.1| chr1 129033 142426 +
4 domain predictions
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Lj1g3v0013390.2
n.a. PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum] gi|502158798|ref|XP_004511285.1| chr1 129033 139310 +
4 domain predictions
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Lj1g3v0014450.1
n.a. PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum] gi|502158798|ref|XP_004511285.1| chr1 157142 165373 -
4 domain predictions
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Lj1g3v0052650.1
n.a. PREDICTED: transcription regulatory protein SNF2-like [Glycine max] gi|356541302|ref|XP_003539117.1| chr1 609689 616808 +
4 domain predictions
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Lj1g3v0114230.1
n.a. PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Glycine max] gi|356538244|ref|XP_003537614.1| chr1 1321246 1327265 -
4 domain predictions
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Lj1g3v0114230.2
n.a. PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Glycine max] gi|356538244|ref|XP_003537614.1| chr1 1322811 1327265 -
4 domain predictions
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Lj1g3v1788430.1
n.a. PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| chr1 21495977 21527096 +
4 domain predictions
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Lj1g3v1820910.1
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi|502132460|ref|XP_004501371.1| chr1 22216700 22231340 +
4 domain predictions
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Lj1g3v1820910.2
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] gi|356515042|ref|XP_003526210.1| chr1 22216700 22234993 +
4 domain predictions
 –
Lj1g3v1820910.3
n.a. PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi|502132460|ref|XP_004501371.1| chr1 22216700 22234993 +
4 domain predictions
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Lj1g3v1911750.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine max] gi|356507736|ref|XP_003522620.1| chr1 22694596 22700809 +
4 domain predictions
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Lj1g3v2610290.1
n.a. RNA helicase family protein isoform 2 [Theobroma cacao] gi|508774752|gb|EOY22008.1| chr1 30138482 30140397 -
3 domain predictions
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Lj1g3v2628740.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Fragaria vesca subsp]. vesca] gi|470142207|ref|XP_004306806.1| chr1 30744419 30753054 -
4 domain predictions
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Lj1g3v2682530.1
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1| chr1 31209960 31217614 +
4 domain predictions
 –
Lj1g3v2682530.2
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1| chr1 31212558 31217614 +
4 domain predictions
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Lj1g3v3022240.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like [Cicer arietinum] gi|502086882|ref|XP_004488356.1| chr1 34325854 34332933 -
4 domain predictions
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Lj1g3v3317320.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX8 [Glycine max] gi|356502628|ref|XP_003520120.1| chr1 37090007 37096648 +
4 domain predictions
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Lj1g3v3329390.1
n.a. PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] gi|356527455|ref|XP_003532326.1| chr1 37641867 37652700 +
4 domain predictions
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Lj1g3v3609480.1
n.a. PREDICTED: transcriptional regulator ATRX-like [Cicer arietinum] gi|502178492|ref|XP_004516267.1| chr1 41612744 41613751 +
4 domain predictions
 –
Lj1g3v3646360.1
n.a. PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Glycine max] gi|356560587|ref|XP_003548572.1| chr1 42059586 42062865 -
2 domain predictions
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Lj1g3v3930430.1
n.a. PREDICTED: transcription-repair-coupling factor-like [Cicer arietinum] gi|502106943|ref|XP_004493106.1| chr1 45895969 45907657 +
4 domain predictions
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Lj1g3v4104770.1
n.a. DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1| chr1 48682768 48686818 -
4 domain predictions
 –
Lj1g3v4226890.1
n.a. PREDICTED: DNA helicase INO80-like isoform 2 [Glycine max] gi|356572004|ref|XP_003554160.1| chr1 49926976 49938161 +
4 domain predictions
 –
Lj1g3v4277620.1
n.a. PREDICTED: helicase swr1-like [Glycine max] gi|356521080|ref|XP_003529186.1| chr1 50362578 50363640 +
4 domain predictions
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Lj1g3v4435510.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX8 [Glycine max] gi|356502628|ref|XP_003520120.1| chr1 51815657 51821416 -
4 domain predictions
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Lj1g3v4579160.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 57-like [Cicer arietinum] gi|502111093|ref|XP_004493954.1| chr1 54496843 54502619 -
4 domain predictions
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Lj1g3v4657810.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max] gi|356535937|ref|XP_003536498.1| chr1 55282481 55288872 +
4 domain predictions
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Lj1g3v4819930.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] gi|356505715|ref|XP_003521635.1| chr1 58122222 58128209 +
4 domain predictions
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Lj1g3v4834030.1
n.a. ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357442187|ref|XP_003591371.1| chr1 58591542 58595872 -
4 domain predictions
 –
Lj1g3v4848440.1
n.a. DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|357511395|ref|XP_003625986.1| chr1 58700838 58704576 -
4 domain predictions
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Lj1g3v5061000.1
n.a. PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max] gi|356571277|ref|XP_003553805.1| chr1 61957804 61970716 -
4 domain predictions
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Lj2g3v0780560.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 35-like [Glycine max] gi|356505847|ref|XP_003521701.1| chr2 12477348 12480299 -
4 domain predictions
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Lj2g3v0866690.1
n.a. PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| chr2 13389298 13403644 -
4 domain predictions
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Lj2g3v1058030.1
n.a. PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Cicer arietinum] gi|502090935|ref|XP_004489388.1| chr2 16761520 16769133 -
4 domain predictions
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Lj2g3v1365820.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Cicer arietinum] gi|502182992|ref|XP_004517036.1| chr2 21415162 21420994 +
4 domain predictions
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Lj2g3v1451720.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Glycine max] gi|356511678|ref|XP_003524550.1| chr2 22818599 22823838 -
4 domain predictions
 –
Lj2g3v1536140.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 5-like [Glycine max] gi|356531475|ref|XP_003534303.1| chr2 24097685 24102789 -
4 domain predictions
 –
Lj2g3v1549970.1
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Cicer arietinum] gi|502162030|ref|XP_004512366.1| chr2 24460880 24470970 +
4 domain predictions
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Lj2g3v1643230.1
n.a. PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine max] gi|356569961|ref|XP_003553162.1| chr2 25456755 25470290 +
4 domain predictions
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Lj2g3v1758530.1
n.a. PREDICTED: ATP-dependent DNA helicase DDM1-like [Glycine max] gi|356495411|ref|XP_003516571.1| chr2 27090943 27096344 +
4 domain predictions
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Lj2g3v1988820.1
n.a. DNA repair protein rhp54 [Aegilops tauschii] gi|475601294|gb|EMT24776.1| chr2 29602466 29606552 +
4 domain predictions
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Lj2g3v2171850.1
n.a. PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi|502095665|ref|XP_004490508.1| chr2 32539934 32563736 -
4 domain predictions
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Lj2g3v2171850.2
n.a. PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi|502095665|ref|XP_004490508.1| chr2 32540380 32563736 -
4 domain predictions
 –
Lj2g3v2827810.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1 [Glycine max] gi|356540003|ref|XP_003538481.1| chr2 36907270 36912438 -
4 domain predictions
 –
Lj2g3v2831890.1
n.a. DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357492817|ref|XP_003616697.1| chr2 36944549 36953633 -
4 domain predictions
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Lj2g3v3058550.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Glycine max] gi|356554106|ref|XP_003545390.1| chr2 39345611 39360517 -
4 domain predictions
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Lj2g3v3059750.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine max] gi|356554094|ref|XP_003545384.1| chr2 39448373 39453073 +
4 domain predictions
 –