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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:2.40.30.10
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 232 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 0.038s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004199.1
n.a. PREDICTED: NADH-cytochrome b5 reductase 1-like [Glycine max] gi|356556724|ref|XP_003546673.1| chr0 1458341 1465960 -
1 domain prediction
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Lj0g3v0006719.1
n.a. RecName: Full=Nitrate reductase [NADH] gi|730146|sp|P39869.1|NIA_LOTJA chr0 2583624 2588430 -
1 domain prediction
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Lj0g3v0035889.2
n.a. PREDICTED: NADPH-dependent diflavin oxidoreductase ATR3-like [Cicer arietinum] gi|502090092|ref|XP_004489118.1| chr0 11396865 11414991 -
1 domain prediction
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Lj0g3v0038729.1
n.a. PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 1 [Glycine max] gi|356569080|ref|XP_003552734.1| chr0 12610597 12614703 +
1 domain prediction
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Lj0g3v0038729.2
n.a. PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 1 [Glycine max] gi|356569080|ref|XP_003552734.1| chr0 12610597 12614703 +
1 domain prediction
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Lj0g3v0055339.1
n.a. PREDICTED: 50S ribosomal protein L3-1, chloroplastic-like [Glycine max] gi|356507166|ref|XP_003522341.1| chr0 17847299 17849124 -
1 domain prediction
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Lj0g3v0067909.2
n.a. PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Cicer arietinum] gi|502080089|ref|XP_004486455.1| chr0 24198438 24202498 +
1 domain prediction
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Lj0g3v0067919.1
n.a. PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Cicer arietinum] gi|502080089|ref|XP_004486455.1| chr0 24200257 24202812 +
1 domain prediction
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Lj0g3v0069129.1
n.a. n.a. chr0 24876359 24878394 +
1 domain prediction
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Lj0g3v0069139.1
n.a. elongation factor 1-alpha (EF1-a) [Cicer arietinum] gi|3319882|emb|CAA06245.1| chr0 24876556 24878645 -
1 domain prediction
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Lj0g3v0171439.1
n.a. PREDICTED: 60S ribosomal protein L3-like [Glycine max] gi|356576067|ref|XP_003556156.1| chr0 82188354 82192407 -
1 domain prediction
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Lj0g3v0248479.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 128801369 128805462 -
1 domain prediction
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Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
1 domain prediction
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Lj0g3v0281329.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Cicer arietinum] gi|502143941|ref|XP_004505523.1| chr0 145851275 145866261 +
1 domain prediction
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Lj0g3v0341919.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Glycine max] gi|356541316|ref|XP_003539124.1| chr0 179240705 179246839 -
1 domain prediction
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Lj0g3v0344749.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 180904840 180905596 +
1 domain prediction
 –
Lj0g3v0344769.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max] gi|356525780|ref|XP_003531501.1| chr0 180905578 180906345 +
1 domain prediction
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Lj1g3v0296910.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr1 3534273 3536548 +
1 domain prediction
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Lj1g3v0296920.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like isoform 1 [Vitis vinifera] gi|225452282|ref|XP_002271032.1| chr1 3535434 3537275 +
1 domain prediction
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Lj1g3v1353680.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr1 16105759 16110082 +
1 domain prediction
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Lj1g3v1380860.1
n.a. PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum] gi|502137208|ref|XP_004503008.1| chr1 16656786 16667427 -
1 domain prediction
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Lj1g3v1386650.1
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357464889|ref|XP_003602726.1| chr1 17014882 17023703 +
1 domain prediction
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Lj1g3v1548790.1
n.a. PREDICTED: NADPH--cytochrome P450 reductase-like isoform X2 [Cicer arietinum] gi|502133111|ref|XP_004501654.1| chr1 18530917 18540881 -
1 domain prediction
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Lj1g3v3328750.2
n.a. n.a. chr1 37288617 37294949 -
1 domain prediction
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Lj1g3v3458730.1
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357505521|ref|XP_003623049.1| chr1 40132149 40149370 -
1 domain prediction
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Lj1g3v3458730.2
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357505521|ref|XP_003623049.1| chr1 40132149 40150154 -
1 domain prediction
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Lj1g3v3458730.3
n.a. Respiratory burst oxidase-like protein [Medicago truncatula] gi|357505521|ref|XP_003623049.1| chr1 40132149 40149370 -
1 domain prediction
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Lj1g3v3690420.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr1 42579735 42582487 +
1 domain prediction
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Lj1g3v3975720.1
n.a. PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| chr1 46969692 46976329 -
1 domain prediction
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Lj1g3v4012860.1
n.a. NADH:cytochrome b5 reductase [Vernicia fordii] gi|55979111|gb|AAV69019.1| chr1 47516826 47519835 +
1 domain prediction
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Lj1g3v4012860.2
n.a. NADH:cytochrome b5 reductase [Vernicia fordii] gi|55979111|gb|AAV69019.1| chr1 47516826 47521057 +
1 domain prediction
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Lj1g3v4408630.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi|356572160|ref|XP_003554238.1| chr1 51422362 51426506 -
1 domain prediction
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Lj1g3v4808860.1
n.a. PREDICTED: translation initiation factor IF-2-like isoform X1 [Cicer arietinum] gi|502154667|ref|XP_004509778.1| chr1 58071813 58078537 -
1 domain prediction
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Lj2g3v0237250.1
n.a. PREDICTED: elongation factor 1-alpha-like [Cicer arietinum] gi|502091438|ref|XP_004489551.1| chr2 4065555 4068074 -
1 domain prediction
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Lj2g3v0690370.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981079 +
1 domain prediction
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Lj2g3v0690370.2
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981613 +
1 domain prediction
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Lj2g3v1024280.1
n.a. FAD/NAD(P)-binding oxidoreductase family protein [Theobroma cacao] gi|508785740|gb|EOY32996.1| chr2 16351624 16358009 +
1 domain prediction
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Lj2g3v1024280.2
n.a. FAD/NAD(P)-binding oxidoreductase family protein [Theobroma cacao] gi|508785740|gb|EOY32996.1| chr2 16352119 16358009 +
1 domain prediction
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Lj2g3v2082320.1
n.a. PREDICTED: respiratory burst oxidase homolog protein F-like isoform 1 [Glycine max] gi|356497271|ref|XP_003517484.1| chr2 31176114 31184640 +
1 domain prediction
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Lj3g3v0965560.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 12666294 12670036 +
1 domain prediction
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Lj3g3v0965570.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| chr3 12667005 12670366 +
1 domain prediction
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Lj3g3v0965840.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X2 [Cicer arietinum] gi|502089140|ref|XP_004488828.1| chr3 12847330 12851309 -
1 domain prediction
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Lj3g3v0965840.2
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr3 12847330 12852288 -
1 domain prediction
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Lj3g3v0988820.1
n.a. PREDICTED: translation initiation factor IF-2, chloroplastic-like [Glycine max] gi|356525823|ref|XP_003531521.1| chr3 13311370 13320024 +
1 domain prediction
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Lj3g3v2315550.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| chr3 28433062 28438042 -
1 domain prediction
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Lj3g3v2316610.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 28482403 28485647 -
1 domain prediction
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Lj3g3v2316620.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356556977|ref|XP_003546795.1| chr3 28483867 28486201 -
1 domain prediction
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Lj3g3v2737570.1
n.a. PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502099927|ref|XP_004491593.1| chr3 33828612 33832107 -
1 domain prediction
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Lj3g3v3237870.1
n.a. PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cicer arietinum] gi|502148249|ref|XP_004507093.1| chr3 39912581 39915940 +
1 domain prediction
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Lj3g3v3237880.1
n.a. PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cicer arietinum] gi|502148249|ref|XP_004507093.1| chr3 39915473 39916423 +
1 domain prediction
 –