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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000070
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 165 results. Now displaying 2 of 4 with 50 rows per page. This search has taken 6.742s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4875690.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] gi|356572750|ref|XP_003554529.1| chr1 59195524 59197958 +
2 domain predictions
2 GO terms
Lj1g3v4918600.2
n.a. Pectinesterase [Medicago truncatula] gi|357511819|ref|XP_003626198.1| chr1 59655230 59663963 +
2 domain predictions
2 GO terms
Lj1g3v4918610.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 21-like [Glycine max] gi|356504022|ref|XP_003520798.1| chr1 59666824 59669096 +
2 domain predictions
2 GO terms
Lj1g3v5062610.1
n.a. Pectinesterase [Medicago truncatula] gi|357514339|ref|XP_003627458.1| chr1 62190906 62199313 -
2 domain predictions
2 GO terms
Lj2g3v0876710.1
n.a. PREDICTED: probable pectinesterase 53-like [Glycine max] gi|356495321|ref|XP_003516527.1| chr2 13461544 13464674 -
2 domain predictions
2 GO terms
Lj2g3v1068650.1
n.a. Pectin methylesterase 31 isoform 1 [Theobroma cacao] gi|508711640|gb|EOY03537.1| chr2 17161470 17164709 +
2 domain predictions
2 GO terms
Lj2g3v3281250.1
n.a. PREDICTED: pectinesterase QRT1-like [Glycine max] gi|356553513|ref|XP_003545100.1| chr2 41730311 41733649 +
2 domain predictions
2 GO terms
Lj2g3v3281260.1
n.a. Pectinesterase [Medicago truncatula] gi|357495001|ref|XP_003617789.1| chr2 41738182 41739767 +
2 domain predictions
2 GO terms
Lj3g3v0797430.1
n.a. Pectinesterase [Medicago truncatula] gi|357456165|ref|XP_003598363.1| chr3 9528204 9531734 +
2 domain predictions
2 GO terms
Lj3g3v0797440.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 47-like [Glycine max] gi|356517724|ref|XP_003527536.1| chr3 9529684 9537178 -
2 domain predictions
2 GO terms
Lj3g3v1602740.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356503911|ref|XP_003520743.1| chr3 20265579 20266058 +
2 domain predictions
2 GO terms
Lj3g3v1602820.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356503911|ref|XP_003520743.1| chr3 20282996 20283598 +
2 domain predictions
2 GO terms
Lj3g3v2037540.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cicer arietinum] gi|502117077|ref|XP_004495691.1| chr3 26054112 26056318 +
2 domain predictions
2 GO terms
Lj3g3v2574480.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor U1-like [Glycine max] gi|356520174|ref|XP_003528739.1| chr3 31205371 31209887 +
2 domain predictions
2 GO terms
Lj3g3v2574490.1
n.a. Pectinesterase [Medicago truncatula] gi|357514339|ref|XP_003627458.1| chr3 31208093 31210980 +
2 domain predictions
2 GO terms
Lj3g3v2575530.1
n.a. PREDICTED: pectinesterase 3-like [Cicer arietinum] gi|502156632|ref|XP_004510571.1| chr3 31223784 31226119 +
2 domain predictions
2 GO terms
Lj3g3v2575540.1
n.a. PREDICTED: pectinesterase 3-like [Cicer arietinum] gi|502156632|ref|XP_004510571.1| chr3 31223784 31226684 +
2 domain predictions
2 GO terms
Lj3g3v3188400.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cicer arietinum] gi|502124408|ref|XP_004498516.1| chr3 39251853 39255898 -
2 domain predictions
2 GO terms
Lj4g3v0398290.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cicer arietinum] gi|502117077|ref|XP_004495691.1| chr4 5117884 5119764 +
2 domain predictions
2 GO terms
Lj4g3v2215360.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 13-like [Glycine max] gi|356564706|ref|XP_003550590.1| chr4 30682981 30684000 -
2 domain predictions
2 GO terms
Lj4g3v2215370.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 13-like [Glycine max] gi|356564706|ref|XP_003550590.1| chr4 30682981 30684055 -
2 domain predictions
2 GO terms
Lj4g3v2215400.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 12-like [Glycine max] gi|356556434|ref|XP_003546531.1| chr4 30689308 30691951 -
2 domain predictions
2 GO terms
Lj4g3v2215410.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cicer arietinum] gi|502150638|ref|XP_004508051.1| chr4 30697542 30699789 -
2 domain predictions
2 GO terms
Lj4g3v2215470.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cicer arietinum] gi|502150638|ref|XP_004508051.1| chr4 30710180 30713362 -
2 domain predictions
2 GO terms
Lj4g3v2291340.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor-like [Cicer arietinum] gi|502150932|ref|XP_004508195.1| chr4 31877738 31879831 +
2 domain predictions
2 GO terms
Lj4g3v2753030.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Cicer arietinum] gi|502139879|ref|XP_004503950.1| chr4 36991589 36994437 +
2 domain predictions
2 GO terms
Lj4g3v3099630.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 6-like, partial [Glycine max] gi|356511311|ref|XP_003524370.1| chr4 41351075 41354392 -
2 domain predictions
2 GO terms
Lj5g3v1548720.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor VGDH2-like [Glycine max] gi|356499573|ref|XP_003518613.1| chr5 22638306 22640246 -
2 domain predictions
2 GO terms
Lj5g3v1548730.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Glycine max] gi|356533477|ref|XP_003535290.1| chr5 22646343 22648476 -
2 domain predictions
2 GO terms
Lj5g3v1573150.1
n.a. PREDICTED: probable pectinesterase 53-like [Cicer arietinum] gi|502117637|ref|XP_004495886.1| chr5 22850831 22854819 +
2 domain predictions
2 GO terms
Lj5g3v1604480.1
n.a. Pectinesterase [Medicago truncatula] gi|357442409|ref|XP_003591482.1| chr5 23417959 23420212 +
2 domain predictions
2 GO terms
Lj6g3v0485160.1
n.a. PREDICTED: probable pectinesterase 53-like [Glycine max] gi|356523858|ref|XP_003530551.1| chr6 4822407 4826500 -
2 domain predictions
2 GO terms
Lj6g3v1138510.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] gi|356556436|ref|XP_003546532.1| chr6 13955041 13958872 +
2 domain predictions
2 GO terms
Lj6g3v1915720.1
n.a. PREDICTED: probable pectinesterase 67-like [Cicer arietinum] gi|502080361|ref|XP_004486539.1| chr6 21469552 21470958 +
2 domain predictions
2 GO terms
LotjaGi1g1v0017200.1
n.a. Pectinesterase; TAIR: AT5G55590.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|A0A1J7GUK5|A0A1J7GUK5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0017200 LjG1.1_chr1 2162283 2165407 -
2 domain predictions
2 GO terms
LotjaGi1g1v0017300.1
n.a. Pectinesterase; TAIR: AT5G55590.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|K7KBL9|K7KBL9_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0017300 LjG1.1_chr1 2167438 2172571 -
2 domain predictions
2 GO terms
LotjaGi1g1v0285200.1
n.a. Pectinesterase; TAIR: AT3G49220.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34; TrEMBL-Plants: tr|G7J6V7|G7J6V7_MEDTR Pectinesterase; Found in the gene: LotjaGi1g1v0285200 LjG1.1_chr1 69343985 69347386 +
2 domain predictions
2 GO terms
LotjaGi1g1v0285700.1
n.a. Pectinesterase; TAIR: AT5G55590.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|A0A1J7GUK5|A0A1J7GUK5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0285700 LjG1.1_chr1 69431594 69434549 +
2 domain predictions
2 GO terms
LotjaGi1g1v0288600.1
n.a. Pectinesterase; TAIR: AT5G55590.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|A0A1J7HUE3|A0A1J7HUE3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288600 LjG1.1_chr1 69954640 69958491 -
2 domain predictions
2 GO terms
LotjaGi1g1v0288600.2
n.a. Pectinesterase; TAIR: AT5G55590.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|A0A1J7HUE3|A0A1J7HUE3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288600 LjG1.1_chr1 69954640 69958491 -
2 domain predictions
2 GO terms
LotjaGi1g1v0317700.1
n.a. Pectinesterase; TAIR: AT5G09760.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9LXD9|PME51_ARATH Probable pectinesterase/pectinesterase inhibitor 51; TrEMBL-Plants: tr|V7AWP8|V7AWP8_PHAVU Pectinesterase; Found in the gene: LotjaGi1g1v0317700 LjG1.1_chr1 76511719 76521227 -
2 domain predictions
2 GO terms
LotjaGi1g1v0317700.2
n.a. Pectinesterase; TAIR: AT5G09760.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9LXD9|PME51_ARATH Probable pectinesterase/pectinesterase inhibitor 51; TrEMBL-Plants: tr|V7AWP8|V7AWP8_PHAVU Pectinesterase; Found in the gene: LotjaGi1g1v0317700 LjG1.1_chr1 76511863 76521209 -
2 domain predictions
2 GO terms
LotjaGi1g1v0506400.1
n.a. Pectinesterase; TAIR: AT3G29090.1 pectin methylesterase 31; Swiss-Prot: sp|Q9LVQ0|PME31_ARATH Pectinesterase 31; TrEMBL-Plants: tr|I3SHJ1|I3SHJ1_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0506400 LjG1.1_chr1 102457563 102461910 -
2 domain predictions
2 GO terms
LotjaGi1g1v0532600.1
n.a. Pectinesterase; TAIR: AT3G05610.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21; TrEMBL-Plants: tr|I1KGU8|I1KGU8_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0532600 LjG1.1_chr1 105952431 105957049 -
2 domain predictions
2 GO terms
LotjaGi1g1v0574600.1
n.a. Pectinesterase; TAIR: AT1G11580.1 methylesterase PCR A; Swiss-Prot: sp|P09607|PME21_SOLLC Pectinesterase 2.1; TrEMBL-Plants: tr|I3SVI0|I3SVI0_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0574600 LjG1.1_chr1 110890144 110897179 +
2 domain predictions
2 GO terms
LotjaGi1g1v0574600.2
n.a. Pectinesterase; TAIR: AT1G11580.1 methylesterase PCR A; Swiss-Prot: sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18; TrEMBL-Plants: tr|I3SVI0|I3SVI0_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0574600 LjG1.1_chr1 110892429 110893110 +
2 domain predictions
2 GO terms
LotjaGi1g1v0574800.1
n.a. Pectinesterase; TAIR: AT1G11580.1 methylesterase PCR A; Swiss-Prot: sp|P09607|PME21_SOLLC Pectinesterase 2.1; TrEMBL-Plants: tr|I3SVI0|I3SVI0_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0574800 LjG1.1_chr1 110913382 110930293 +
2 domain predictions
2 GO terms
LotjaGi1g1v0580800.1
n.a. Pectinesterase; TAIR: AT3G24130.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29; TrEMBL-Plants: tr|K7K766|K7K766_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0580800 LjG1.1_chr1 112024764 112033485 +
2 domain predictions
2 GO terms
LotjaGi1g1v0603100.1
n.a. Pectinesterase; TAIR: AT3G60730.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q84R10|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36; TrEMBL-Plants: tr|I1N7G8|I1N7G8_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0603100 LjG1.1_chr1 114809170 114811804 -
2 domain predictions
2 GO terms
LotjaGi1g1v0603100.2
n.a. Pectinesterase; TAIR: AT3G60730.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q84R10|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36; TrEMBL-Plants: tr|I1N7G8|I1N7G8_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0603100 LjG1.1_chr1 114809170 114811970 -
2 domain predictions
2 GO terms