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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001680
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We have found 837 results. Now displaying 7 of 17 with 50 rows per page. This search has taken 7.687s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj6g3v1018310.1
n.a. PREDICTED: WD40 repeat-containing protein SMU1-like isoform X1 [Cicer arietinum] gi|502152361|ref|XP_004508891.1| chr6 11291741 11301581 +
4 domain predictions
1 GO term
Lj6g3v1093610.1
n.a. p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|357450557|ref|XP_003595555.1| chr6 13440261 13443733 -
4 domain predictions
1 GO term
Lj6g3v1259720.1
n.a. FVE [Pisum sativum] gi|61611729|gb|AAX47182.1| chr6 15408805 15414223 +
4 domain predictions
1 GO term
Lj6g3v1318650.1
n.a. PREDICTED: transducin beta-like protein 3-like [Glycine max] gi|356513431|ref|XP_003525417.1| chr6 15714740 15717532 -
3 domain predictions
1 GO term
Lj6g3v1422190.1
n.a. PREDICTED: nucleolar protein 10-like [Glycine max] gi|356529461|ref|XP_003533310.1| chr6 16888726 16896719 +
2 domain predictions
1 GO term
Lj6g3v1464010.1
n.a. PREDICTED: protein pleiotropic regulatory locus 1-like [Glycine max] gi|356556092|ref|XP_003546361.1| chr6 17188410 17194314 -
4 domain predictions
1 GO term
Lj6g3v1464020.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|334185156|ref|NP_001189833.1| chr6 17197175 17203576 -
4 domain predictions
1 GO term
Lj6g3v1513530.1
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr6 17425648 17435972 +
4 domain predictions
1 GO term
Lj6g3v1513530.2
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr6 17425648 17431016 +
4 domain predictions
1 GO term
Lj6g3v1559380.1
n.a. PREDICTED: PH-interacting protein-like isoform X2 [Cicer arietinum] gi|502084839|ref|XP_004487773.1| chr6 17801938 17818769 -
4 domain predictions
1 GO term
Lj6g3v1655350.1
n.a. PREDICTED: U3 small nucleolar RNA-interacting protein 2-like isoform 1 [Glycine max] gi|356533031|ref|XP_003535072.1| chr6 18613258 18617488 -
4 domain predictions
1 GO term
Lj6g3v1694940.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357448221|ref|XP_003594386.1| chr6 19151580 19156971 -
4 domain predictions
1 GO term
Lj6g3v1705080.1
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356558011|ref|XP_003547303.1| chr6 19229565 19235541 -
2 domain predictions
1 GO term
Lj6g3v1705080.2
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356558011|ref|XP_003547303.1| chr6 19232848 19238419 -
4 domain predictions
1 GO term
Lj6g3v1705080.3
n.a. PREDICTED: enhancer of mRNA-decapping protein 4-like [Glycine max] gi|356558011|ref|XP_003547303.1| chr6 19233232 19238419 -
3 domain predictions
1 GO term
Lj6g3v1916020.1
n.a. PREDICTED: LEC14B homolog [Glycine max] gi|356555581|ref|XP_003546109.1| chr6 21609171 21618317 -
4 domain predictions
1 GO term
Lj6g3v1916020.2
n.a. PREDICTED: LEC14B homolog [Glycine max] gi|356549044|ref|XP_003542908.1| chr6 21610734 21615617 -
4 domain predictions
1 GO term
Lj6g3v1916020.3
n.a. PREDICTED: LEC14B homolog isoform X1 [Cicer arietinum] gi|502078861|ref|XP_004486079.1| chr6 21611648 21618317 -
4 domain predictions
1 GO term
Lj6g3v1984390.1
n.a. Transducin/WD40 repeat-like superfamily protein isoform 5, partial [Theobroma cacao] gi|508717466|gb|EOY09363.1| chr6 22950167 22951321 +
4 domain predictions
1 GO term
Lj6g3v1984390.2
n.a. PREDICTED: protein LST8 homolog isoform X1 [Cicer arietinum] gi|502078371|ref|XP_004485923.1| chr6 22950167 22954933 +
4 domain predictions
1 GO term
Lj6g3v2017550.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356557699|ref|XP_003547151.1| chr6 23824492 23826133 -
4 domain predictions
1 GO term
Lj6g3v2017550.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] gi|356557699|ref|XP_003547151.1| chr6 23824492 23830244 -
4 domain predictions
1 GO term
Lj6g3v2066940.1
n.a. Katanin p80 WD40-containing subunit B1 [Medicago truncatula] gi|357446405|ref|XP_003593480.1| chr6 24367940 24380272 +
4 domain predictions
1 GO term
Lj6g3v2218720.1
n.a. RNA export [Medicago truncatula] gi|357445765|ref|XP_003593160.1| chr6 25863696 25869150 +
4 domain predictions
1 GO term
Lj6g3v2274980.1
n.a. PREDICTED: ribosome biogenesis protein BOP1 homolog [Glycine max] gi|356560725|ref|XP_003548639.1| chr6 26678329 26684472 +
4 domain predictions
1 GO term
LotjaGi1g1v0006700.1
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT4G18905.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9P775|YBEG_SCHPO Uncharacterized WD repeat-containing protein C17D11.16; TrEMBL-Plants: tr|I1JJS2|I1JJS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0006700 LjG1.1_chr1 972091 977021 +
4 domain predictions
1 GO term
LotjaGi1g1v0015400.1
n.a. WD repeat-containing protein; TAIR: AT5G63010.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q55C80|DPH7_DICDI Diphthine methyltransferase homolog; TrEMBL-Plants: tr|G7KEH9|G7KEH9_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi1g1v0015400 LjG1.1_chr1 1984433 1987476 +
4 domain predictions
1 GO term
LotjaGi1g1v0024900.1
n.a. Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPN0|D7UPN0_LOTJA SEC13 family protein; Found in the gene: LotjaGi1g1v0024900 LjG1.1_chr1 2969565 2972454 +
4 domain predictions
1 GO term
LotjaGi1g1v0024900.2
n.a. Protein transport SEC13-like protein; TAIR: AT2G30050.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O64740|SC13B_ARATH Protein transport protein SEC13 homolog B; TrEMBL-Plants: tr|D7UPN0|D7UPN0_LOTJA SEC13 family protein; Found in the gene: LotjaGi1g1v0024900 LjG1.1_chr1 2970841 2971746 +
4 domain predictions
1 GO term
LotjaGi1g1v0046500.1
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6348822 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.2
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.3
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.4
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.5
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.6
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.7
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344668 6348119 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.8
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6349927 6355578 -
4 domain predictions
1 GO term
LotjaGi1g1v0046500.9
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6350520 6354340 -
4 domain predictions
1 GO term
LotjaGi1g1v0057600.1
n.a. F-box/WD-40 repeat-containing protein family; TAIR: AT5G21040.1 F-box protein 2; Swiss-Prot: sp|Q94AD8|FBW3_ARATH F-box/WD-40 repeat-containing protein At5g21040; TrEMBL-Plants: tr|A0A151U1T0|A0A151U1T0_CAJCA F-box/WD-40 repeat-containing protein family; Found in the gene: LotjaGi1g1v0057600 LjG1.1_chr1 8060351 8062862 -
4 domain predictions
1 GO term
LotjaGi1g1v0067500.1
n.a. E3 ubiquitin-protein ligase COP1; TAIR: AT2G32950.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1; TrEMBL-Plants: tr|G7KH91|G7KH91_MEDTR E3 ubiquitin-protein ligase COP1; Found in the gene: LotjaGi1g1v0067500 LjG1.1_chr1 9342364 9354793 -
4 domain predictions
1 GO term
LotjaGi1g1v0076900.1
n.a. Transducin family protein / WD-40 repeat family protein, putative isoform 5; TAIR: AT5G05570.2 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|P38163|SRO77_YEAST Lethal(2) giant larvae protein homolog SRO77; TrEMBL-Plants: tr|A0A0R0LBL8|A0A0R0LBL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0076900 LjG1.1_chr1 11084521 11097330 +
3 domain predictions
1 GO term
LotjaGi1g1v0076900.2
n.a. Syntaxin-binding protein 5; TAIR: AT5G05570.2 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q5DQR4|STB5L_MOUSE Syntaxin-binding protein 5-like; TrEMBL-Plants: tr|K7KAS4|K7KAS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0076900 LjG1.1_chr1 11084523 11099601 +
3 domain predictions
1 GO term
LotjaGi1g1v0086200.1
n.a. Transducin/WD40 repeat protein; TAIR: AT5G05970.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|B3H5K9|NEDD1_ARATH Protein NEDD1; TrEMBL-Plants: tr|A0A0L9UWR8|A0A0L9UWR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0086200 LjG1.1_chr1 12482011 12490016 +
3 domain predictions
1 GO term
LotjaGi1g1v0086200.2
n.a. WD repeat-containing protein; TAIR: AT5G05970.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|B3H5K9|NEDD1_ARATH Protein NEDD1; TrEMBL-Plants: tr|A0A1J7HQG3|A0A1J7HQG3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0086200 LjG1.1_chr1 12482275 12485058 +
3 domain predictions
1 GO term
LotjaGi1g1v0086200.3
n.a. Transducin/WD-like repeat-protein; TAIR: AT5G05970.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|B3H5K9|NEDD1_ARATH Protein NEDD1; TrEMBL-Plants: tr|I1JI29|I1JI29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0086200 LjG1.1_chr1 12483367 12489228 +
2 domain predictions
1 GO term
LotjaGi1g1v0121000.1
n.a. Protein DAMAGED DNA-BINDING 2; TAIR: AT5G58760.1 damaged DNA binding 2; Swiss-Prot: sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2; TrEMBL-Plants: tr|I1MBA5|I1MBA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0121000 LjG1.1_chr1 19055314 19063396 -
4 domain predictions
1 GO term
LotjaGi1g1v0124400.1
n.a. WD40 repeat-like protein; TAIR: AT1G15440.1 periodic tryptophan protein 2; Swiss-Prot: sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog; TrEMBL-Plants: tr|A0A0S3RH52|A0A0S3RH52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0124400 LjG1.1_chr1 19712311 19718515 -
4 domain predictions
1 GO term
LotjaGi1g1v0183900.1
n.a. Transducin/WD40 repeat protein; TAIR: AT5G50120.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|I1KCK1|I1KCK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0183900 LjG1.1_chr1 35903167 35906483 -
4 domain predictions
1 GO term
LotjaGi1g1v0199000.1
n.a. Transcriptional corepressor LEUNIG; TAIR: AT2G32700.1 LEUNIG-like protein; Swiss-Prot: sp|O48847|LUH_ARATH Transcriptional corepressor LEUNIG_HOMOLOG; TrEMBL-Plants: tr|I1LA80|I1LA80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0199000 LjG1.1_chr1 42118110 42136073 +
4 domain predictions
1 GO term
LotjaGi1g1v0199000.10
n.a. Transcriptional corepressor LEUNIG; TAIR: AT2G32700.6 LEUNIG-like protein; Swiss-Prot: sp|O48847|LUH_ARATH Transcriptional corepressor LEUNIG_HOMOLOG; TrEMBL-Plants: tr|A0A0R0HRJ8|A0A0R0HRJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0199000 LjG1.1_chr1 42118645 42134496 +
4 domain predictions
1 GO term