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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:3.40.140.10
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 61 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.034s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0066279.1
n.a. PREDICTED: guanine deaminase-like isoform X1 [Cicer arietinum] gi|502086321|ref|XP_004488180.1| chr0 23273854 23276241 -
1 domain prediction
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Lj0g3v0132579.1
n.a. PREDICTED: riboflavin biosynthesis protein RibD-like [Glycine max] gi|356506247|ref|XP_003521898.1| chr0 60515534 60518148 -
1 domain prediction
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Lj0g3v0265709.1
n.a. 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi|357447037|ref|XP_003593794.1| chr0 137648273 137652195 +
1 domain prediction
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Lj0g3v0284819.1
n.a. PREDICTED: deoxycytidylate deaminase-like [Cicer arietinum] gi|502176161|ref|XP_004515811.1| chr0 147764954 147768976 +
1 domain prediction
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Lj1g3v1966230.1
n.a. PREDICTED: COP9 signalosome complex subunit 5a-like [Cicer arietinum] gi|502132165|ref|XP_004501247.1| chr1 23275982 23280268 +
1 domain prediction
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Lj1g3v2835980.1
n.a. PREDICTED: riboflavin biosynthesis protein RibD-like [Cicer arietinum] gi|502105588|ref|XP_004492842.1| chr1 32204682 32209784 +
1 domain prediction
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Lj2g3v0912020.1
n.a. Cytidine deaminase [Medicago truncatula] gi|357501295|ref|XP_003620936.1| chr2 13982652 13983996 +
1 domain prediction
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Lj2g3v1192960.1
n.a. PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Glycine max] gi|356502702|ref|XP_003520156.1| chr2 18834305 18843959 -
1 domain prediction
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Lj2g3v1404830.1
n.a. PREDICTED: AMSH-like ubiquitin thiolesterase 2-like [Glycine max] gi|356497755|ref|XP_003517724.1| chr2 22153204 22158550 +
1 domain prediction
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Lj2g3v1404830.2
n.a. STAM-binding protein [Medicago truncatula] gi|357485879|ref|XP_003613227.1| chr2 22153753 22158550 +
1 domain prediction
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Lj3g3v0075800.1
n.a. Lys-63-specific deubiquitinase BRCC36 [Medicago truncatula] gi|357455111|ref|XP_003597836.1| chr3 735748 741228 +
1 domain prediction
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Lj3g3v1294540.1
n.a. PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like [Glycine max] gi|356547101|ref|XP_003541956.1| chr3 16496838 16501300 -
1 domain prediction
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Lj4g3v2137110.1
n.a. PREDICTED: tRNA-specific adenosine deaminase 2 [Glycine max] gi|356549373|ref|XP_003543068.1| chr4 29361681 29365776 -
1 domain prediction
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Lj4g3v2225630.1
n.a. PREDICTED: tRNA-specific adenosine deaminase-like [Cicer arietinum] gi|502150685|ref|XP_004508073.1| chr4 30827425 30830361 +
1 domain prediction
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Lj4g3v2282930.1
n.a. PREDICTED: AMSH-like ubiquitin thiolesterase 3-like [Glycine max] gi|356564628|ref|XP_003550553.1| chr4 31748234 31755037 +
1 domain prediction
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Lj4g3v3015270.1
n.a. Cytidine deaminase [Medicago truncatula] gi|357520685|ref|XP_003630631.1| chr4 40403284 40404570 -
1 domain prediction
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Lj5g3v0001030.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like [Glycine max] gi|356552194|ref|XP_003544454.1| chr5 9926 13986 +
1 domain prediction
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Lj6g3v1966950.1
n.a. 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi|357447037|ref|XP_003593794.1| chr6 22704387 22714402 +
1 domain prediction
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LotjaGi1g1v0014900.1
n.a. ER membrane protein complex subunit 8; TAIR: AT5G55940.1 Uncharacterized protein family (UPF0172); Swiss-Prot: sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog; TrEMBL-Plants: tr|I3S6K8|I3S6K8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0014900 LjG1.1_chr1 1943131 1947042 +
1 domain prediction
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LotjaGi1g1v0014900.2
n.a. ER membrane protein complex subunit 8; TAIR: AT5G55940.1 Uncharacterized protein family (UPF0172); Swiss-Prot: sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog; TrEMBL-Plants: tr|I3S6K8|I3S6K8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0014900 LjG1.1_chr1 1943303 1945661 +
1 domain prediction
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LotjaGi1g1v0039100_LC.1
n.a. 26S proteasome non-ATPase regulatory subunit 7 family protein; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|B7FLW2|B7FLW2_MEDTR 26S proteasome regulatory particle non-ATPase subunit 8; Found in the gene: LotjaGi1g1v0039100_LC LjG1.1_chr1 5440624 5447503 +
1 domain prediction
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LotjaGi1g1v0039100_LC.2
n.a. 26S proteasome non-ATPase regulatory subunit 7 family protein; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|B7FLW2|B7FLW2_MEDTR 26S proteasome regulatory particle non-ATPase subunit 8; Found in the gene: LotjaGi1g1v0039100_LC LjG1.1_chr1 5440624 5447525 +
1 domain prediction
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LotjaGi1g1v0080300.1
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|V7CZG2|V7CZG2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 LjG1.1_chr1 11598464 11604711 +
1 domain prediction
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LotjaGi1g1v0080300.2
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.2 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I1LMP2|I1LMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 LjG1.1_chr1 11598721 11602762 +
1 domain prediction
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LotjaGi1g1v0080300.3
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I1LMP2|I1LMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 LjG1.1_chr1 11598721 11602762 +
1 domain prediction
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LotjaGi1g1v0393500.1
n.a. COP9 signalosome complex subunit 5; TAIR: AT1G71230.1 COP9-signalosome 5B; Swiss-Prot: sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a; TrEMBL-Plants: tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex subunit 5; Found in the gene: LotjaGi1g1v0393500 LjG1.1_chr1 87802062 87807462 +
1 domain prediction
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LotjaGi1g1v0393500.2
n.a. COP9 signalosome complex subunit 5; TAIR: AT1G71230.1 COP9-signalosome 5B; Swiss-Prot: sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a; TrEMBL-Plants: tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex subunit 5; Found in the gene: LotjaGi1g1v0393500 LjG1.1_chr1 87802086 87806390 +
1 domain prediction
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LotjaGi1g1v0486000.1
n.a. Riboflavin biosynthesis protein RibD; TAIR: AT3G47390.2 cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q9STY4|RIBRX_ARATH Riboflavin biosynthesis protein PYRR, chloroplastic; TrEMBL-Plants: tr|A0A1J7G1G5|A0A1J7G1G5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0486000 LjG1.1_chr1 99913085 99918192 +
1 domain prediction
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LotjaGi1g1v0530600.1
n.a. Eukaryotic translation initiation factor 3 subunit H; TAIR: AT1G10840.1 translation initiation factor 3 subunit H1; Swiss-Prot: sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H; TrEMBL-Plants: tr|I3SB83|I3SB83_LOTJA Eukaryotic translation initiation factor 3 subunit H; Found in the gene: LotjaGi1g1v0530600 LjG1.1_chr1 105774971 105780448 +
1 domain prediction
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LotjaGi1g1v0530600.2
n.a. Eukaryotic translation initiation factor 3 subunit H; TAIR: AT1G10840.1 translation initiation factor 3 subunit H1; Swiss-Prot: sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H; TrEMBL-Plants: tr|I3SB83|I3SB83_LOTJA Eukaryotic translation initiation factor 3 subunit H; Found in the gene: LotjaGi1g1v0530600 LjG1.1_chr1 105775109 105778811 +
1 domain prediction
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LotjaGi2g1v0205500.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G48790.1 associated molecule with the SH3 domain of STAM 1; Swiss-Prot: sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1; TrEMBL-Plants: tr|A0A0H4LWA1|A0A0H4LWA1_LOTJA Associated molecule with the SH3 domain of STAM 1; Found in the gene: LotjaGi2g1v0205500 LjG1.1_chr2 64885168 64896299 -
1 domain prediction
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LotjaGi2g1v0205500.2
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G48790.1 associated molecule with the SH3 domain of STAM 1; Swiss-Prot: sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1; TrEMBL-Plants: tr|A0A0H4LWA1|A0A0H4LWA1_LOTJA Associated molecule with the SH3 domain of STAM 1; Found in the gene: LotjaGi2g1v0205500 LjG1.1_chr2 64885290 64891862 -
1 domain prediction
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LotjaGi2g1v0233100.1
n.a. Cytidine deaminase; TAIR: AT2G19570.1 cytidine deaminase 1; Swiss-Prot: sp|O65896|CDA1_ARATH Cytidine deaminase 1; TrEMBL-Plants: tr|A0A1J7HS04|A0A1J7HS04_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0233100 LjG1.1_chr2 69211049 69213386 +
1 domain prediction
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LotjaGi2g1v0284200.1
n.a. tRNA-specific adenosine deaminase; TAIR: AT1G68720.1 tRNA arginine adenosine deaminase; Swiss-Prot: sp|Q9S7I0|TADA_ARATH tRNA(adenine(34)) deaminase, chloroplastic; TrEMBL-Plants: tr|K7K815|K7K815_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0284200 LjG1.1_chr2 75706485 75728433 -
1 domain prediction
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LotjaGi2g1v0320500.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G10600.1 associated molecule with the SH3 domain of STAM 2; Swiss-Prot: sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2; TrEMBL-Plants: tr|A0A151TGJ4|A0A151TGJ4_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi2g1v0320500 LjG1.1_chr2 79558339 79563683 +
1 domain prediction
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LotjaGi2g1v0320500.2
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G10600.1 associated molecule with the SH3 domain of STAM 2; Swiss-Prot: sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2; TrEMBL-Plants: tr|A0A151TGJ4|A0A151TGJ4_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi2g1v0320500 LjG1.1_chr2 79558339 79563683 +
1 domain prediction
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LotjaGi3g1v0008200.1
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920193 932690 +
1 domain prediction
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LotjaGi3g1v0008200.2
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920435 932012 +
1 domain prediction
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LotjaGi3g1v0008200.3
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920435 932012 +
1 domain prediction
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LotjaGi3g1v0008200.4
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920935 932012 +
1 domain prediction
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LotjaGi3g1v0008200.5
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|A0A151SPN6|A0A151SPN6_CAJCA Pre-mRNA-processing-splicing factor 8; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 930932 931396 +
1 domain prediction
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LotjaGi3g1v0011600.1
n.a. Lys-63-specific deubiquitinase BRCC36; TAIR: AT1G80210.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36; TrEMBL-Plants: tr|C6T923|C6T923_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0011600 LjG1.1_chr3 1273634 1280000 +
1 domain prediction
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LotjaGi3g1v0011600.2
n.a. Lys-63-specific deubiquitinase BRCC36; TAIR: AT1G80210.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|A5PJP6|BRCC3_BOVIN Lys-63-specific deubiquitinase BRCC36; TrEMBL-Plants: tr|C6T923|C6T923_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0011600 LjG1.1_chr3 1273743 1280183 +
1 domain prediction
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LotjaGi3g1v0011600.3
n.a. Lys-63-specific deubiquitinase BRCC36; TAIR: AT1G80210.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36; TrEMBL-Plants: tr|C6T923|C6T923_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0011600 LjG1.1_chr3 1273967 1279361 +
1 domain prediction
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LotjaGi3g1v0331000.1
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G56280.1 COP9 signalosome subunit 6A; Swiss-Prot: sp|Q8W206|CSN6A_ARATH COP9 signalosome complex subunit 6a; TrEMBL-Plants: tr|I3S7E3|I3S7E3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0331000 LjG1.1_chr3 69959179 69968413 +
1 domain prediction
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LotjaGi4g1v0221700.1
n.a. Deoxycytidylate deaminase; TAIR: AT3G48540.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase; TrEMBL-Plants: tr|I1K0B7|I1K0B7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0221700 LjG1.1_chr4 52573439 52577636 +
1 domain prediction
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LotjaGi4g1v0305600.1
n.a. Deaminase-related family protein; TAIR: AT1G48175.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2; TrEMBL-Plants: tr|A0A0L9TEI2|A0A0L9TEI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0305600 LjG1.1_chr4 68122050 68125936 -
1 domain prediction
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LotjaGi4g1v0317000.1
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|I3SAE1|I3SAE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0317000 LjG1.1_chr4 69423326 69426469 -
1 domain prediction
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LotjaGi4g1v0317000.2
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|I3SAE1|I3SAE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0317000 LjG1.1_chr4 69423828 69425762 -
1 domain prediction
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LotjaGi4g1v0336100.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT4G16144.1 associated molecule with the SH3 domain of STAM 3; Swiss-Prot: sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3; TrEMBL-Plants: tr|A0A151ST25|A0A151ST25_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi4g1v0336100 LjG1.1_chr4 71641876 71649001 +
1 domain prediction
 –