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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001757
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We have found 263 results. Now displaying 2 of 6 with 50 rows per page. This search has taken 8.598s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2054440.1
n.a. PREDICTED: calcium-transporting ATPase 9, plasma membrane-type-like [Glycine max] gi|356523453|ref|XP_003530353.1| chr3 26398069 26417012 -
2 domain predictions
1 GO term
Lj3g3v2351110.1
n.a. Autoinhibited calcium ATPase [Theobroma cacao] gi|508713931|gb|EOY05828.1| chr3 29576939 29580010 -
3 domain predictions
1 GO term
Lj3g3v2478790.1
n.a. type IIA calcium ATPase [Medicago truncatula] gi|17342714|gb|AAL35972.1| chr3 30493169 30495931 +
2 domain predictions
1 GO term
Lj3g3v2664380.1
n.a. Aminophospholipid ATPase [Medicago truncatula] gi|357454575|ref|XP_003597568.1| chr3 32502834 32506679 -
2 domain predictions
1 GO term
Lj3g3v2810120.2
n.a. PREDICTED: phospholipid-transporting ATPase 2-like isoform X1 [Cicer arietinum] gi|502082752|ref|XP_004487263.1| chr3 34635250 34649589 -
2 domain predictions
1 GO term
Lj3g3v3241020.1
n.a. Heavy metal ATPase [Medicago truncatula] gi|357513319|ref|XP_003626948.1| chr3 39966765 39967157 +
3 domain predictions
1 GO term
Lj3g3v3243170.1
n.a. Heavy metal ATPase [Medicago truncatula] gi|357513319|ref|XP_003626948.1| chr3 40033926 40035912 +
3 domain predictions
1 GO term
Lj3g3v3650370.1
n.a. Calcium-transporting ATPase 4, plasma membrane-type [Medicago truncatula] gi|357471123|ref|XP_003605846.1| chr3 44520034 44522756 +
2 domain predictions
1 GO term
Lj3g3v3651380.1
n.a. Calcium-transporting ATPase 4, plasma membrane-type [Medicago truncatula] gi|357471123|ref|XP_003605846.1| chr3 44522953 44524214 +
3 domain predictions
1 GO term
Lj4g3v0341080.1
n.a. PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Cicer arietinum] gi|502142103|ref|XP_004504792.1| chr4 4529082 4549833 -
2 domain predictions
1 GO term
Lj4g3v0758130.1
n.a. PREDICTED: calcium-transporting ATPase 2, plasma membrane-type-like [Cicer arietinum] gi|502152734|ref|XP_004509067.1| chr4 11890559 11894966 +
3 domain predictions
1 GO term
Lj4g3v0805580.1
n.a. PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [Cicer arietinum] gi|502152805|ref|XP_004509102.1| chr4 12625526 12633930 +
2 domain predictions
1 GO term
Lj4g3v1604460.1
n.a. plasma membrane H+-ATPase [Sesbania rostrata] gi|31580855|dbj|BAC77532.1| chr4 23618936 23625364 +
3 domain predictions
1 GO term
Lj4g3v1604460.2
n.a. PREDICTED: ATPase 11, plasma membrane-type-like isoform X3 [Cicer arietinum] gi|502152150|ref|XP_004508789.1| chr4 23620272 23625364 +
3 domain predictions
1 GO term
Lj4g3v1604460.3
n.a. plasma membrane H+-ATPase [Sesbania rostrata] gi|31580855|dbj|BAC77532.1| chr4 23620789 23624835 +
3 domain predictions
1 GO term
Lj4g3v1772600.1
n.a. Phospholipid-transporting ATPase [Medicago truncatula] gi|357477713|ref|XP_003609142.1| chr4 25139754 25145984 -
2 domain predictions
1 GO term
Lj4g3v2120500.1
n.a. p-type H+-ATPase [Vicia faba] gi|4165323|dbj|BAA37150.1| chr4 29062839 29069462 +
3 domain predictions
1 GO term
Lj4g3v2133900.1
n.a. PREDICTED: cadmium/zinc-transporting ATPase 3-like [Glycine max] gi|356550732|ref|XP_003543738.1| chr4 29269686 29278261 +
2 domain predictions
1 GO term
Lj4g3v2139630.1
n.a. PREDICTED: calcium-transporting ATPase 10, plasma membrane-type-like [Glycine max] gi|356562048|ref|XP_003549287.1| chr4 29483688 29498390 +
2 domain predictions
1 GO term
Lj4g3v2731630.1
n.a. PREDICTED: magnesium-transporting ATPase, P-type 1-like isoform X1 [Cicer arietinum] gi|502140214|ref|XP_004504112.1| chr4 36759096 36764850 +
2 domain predictions
1 GO term
Lj5g3v0586790.1
n.a. p-type H+-ATPase, partial [Vicia faba] gi|1061420|gb|AAA81348.1| chr5 6935965 6937509 +
3 domain predictions
1 GO term
Lj5g3v0875730.1
n.a. PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like [Cicer arietinum] gi|502123238|ref|XP_004498043.1| chr5 12815322 12819800 -
3 domain predictions
1 GO term
Lj5g3v0875730.2
n.a. PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like [Cicer arietinum] gi|502123238|ref|XP_004498043.1| chr5 12815322 12825296 -
3 domain predictions
1 GO term
Lj6g3v1088780.1
n.a. PREDICTED: ATPase 8, plasma membrane-type-like [Cicer arietinum] gi|502089385|ref|XP_004488894.1| chr6 13078524 13084256 +
3 domain predictions
1 GO term
Lj6g3v1317320.1
n.a. PREDICTED: calcium-transporting ATPase 8, plasma membrane-type-like [Glycine max] gi|356530348|ref|XP_003533744.1| chr6 15627261 15646005 -
2 domain predictions
1 GO term
Lj6g3v1318700.1
n.a. PREDICTED: calcium-transporting ATPase 10, plasma membrane-type-like [Glycine max] gi|356562048|ref|XP_003549287.1| chr6 15740866 15749949 +
2 domain predictions
1 GO term
Lj6g3v1358600.1
n.a. PREDICTED: plasma membrane ATPase 4-like isoform 1 [Glycine max] gi|356556196|ref|XP_003546412.1| chr6 16142645 16150982 -
3 domain predictions
1 GO term
Lj6g3v1371840.1
n.a. PREDICTED: cadmium/zinc-transporting ATPase 3-like [Glycine max] gi|356532650|ref|XP_003534884.1| chr6 16252720 16263307 -
2 domain predictions
1 GO term
LotjaGi1g1v0194400.1
n.a. Phospholipid-transporting ATPase; TAIR: AT1G68710.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9; TrEMBL-Plants: tr|A0A0B2QXA4|A0A0B2QXA4_GLYSO Phospholipid-transporting ATPase; Found in the gene: LotjaGi1g1v0194400 LjG1.1_chr1 38586486 38605786 +
2 domain predictions
1 GO term
LotjaGi1g1v0194400.2
n.a. Phospholipid-transporting ATPase; TAIR: AT1G68710.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9; TrEMBL-Plants: tr|A0A0B2QXA4|A0A0B2QXA4_GLYSO Phospholipid-transporting ATPase; Found in the gene: LotjaGi1g1v0194400 LjG1.1_chr1 38586852 38604980 +
2 domain predictions
1 GO term
LotjaGi1g1v0206400.1
n.a. Phospholipid-transporting ATPase; TAIR: AT1G68710.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9; TrEMBL-Plants: tr|V7AXH5|V7AXH5_PHAVU Phospholipid-transporting ATPase; Found in the gene: LotjaGi1g1v0206400 LjG1.1_chr1 44913765 44922670 +
2 domain predictions
1 GO term
LotjaGi1g1v0206400.2
n.a. Phospholipid-transporting ATPase; TAIR: AT1G68710.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9; TrEMBL-Plants: tr|V7AXH5|V7AXH5_PHAVU Phospholipid-transporting ATPase; Found in the gene: LotjaGi1g1v0206400 LjG1.1_chr1 44914461 44921225 +
2 domain predictions
1 GO term
LotjaGi1g1v0206400.3
n.a. Phospholipid-transporting ATPase; TAIR: AT1G68710.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9; TrEMBL-Plants: tr|V7AXH5|V7AXH5_PHAVU Phospholipid-transporting ATPase; Found in the gene: LotjaGi1g1v0206400 LjG1.1_chr1 44914461 44921341 +
2 domain predictions
1 GO term
LotjaGi1g1v0206400.4
n.a. Phospholipid-transporting ATPase; TAIR: AT1G68710.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9; TrEMBL-Plants: tr|A0A151SIQ7|A0A151SIQ7_CAJCA Phospholipid-transporting ATPase; Found in the gene: LotjaGi1g1v0206400 LjG1.1_chr1 44914482 44921163 +
2 domain predictions
1 GO term
LotjaGi1g1v0214400.1
n.a. Plasma membrane ATPase; TAIR: AT5G62670.1 H -ATPase 11; Swiss-Prot: sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type; TrEMBL-Plants: tr|A0A151S7C9|A0A151S7C9_CAJCA Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0214400 LjG1.1_chr1 47281054 47293150 +
3 domain predictions
1 GO term
LotjaGi1g1v0214400.2
n.a. Plasma membrane ATPase; TAIR: AT5G62670.1 H -ATPase 11; Swiss-Prot: sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type; TrEMBL-Plants: tr|A0A151S7C9|A0A151S7C9_CAJCA Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0214400 LjG1.1_chr1 47281102 47288667 +
3 domain predictions
1 GO term
LotjaGi1g1v0214400.3
n.a. Plasma membrane ATPase; TAIR: AT5G62670.1 H -ATPase 11; Swiss-Prot: sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type; TrEMBL-Plants: tr|A0A151S7C9|A0A151S7C9_CAJCA Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0214400 LjG1.1_chr1 47281544 47288146 +
3 domain predictions
1 GO term
LotjaGi1g1v0214400.4
n.a. Plasma membrane ATPase; TAIR: AT5G62670.1 H -ATPase 11; Swiss-Prot: sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type; TrEMBL-Plants: tr|A0A151S7C9|A0A151S7C9_CAJCA Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0214400 LjG1.1_chr1 47281556 47288146 +
3 domain predictions
1 GO term
LotjaGi1g1v0214400.5
n.a. Plasma membrane ATPase; TAIR: AT5G62670.1 H -ATPase 11; Swiss-Prot: sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type; TrEMBL-Plants: tr|A0A151S7C9|A0A151S7C9_CAJCA Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0214400 LjG1.1_chr1 47281613 47288146 +
3 domain predictions
1 GO term
LotjaGi1g1v0214400.6
n.a. Plasma membrane ATPase; TAIR: AT5G62670.1 H -ATPase 11; Swiss-Prot: sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type; TrEMBL-Plants: tr|A0A151S7C9|A0A151S7C9_CAJCA Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0214400 LjG1.1_chr1 47281617 47288146 +
3 domain predictions
1 GO term
LotjaGi1g1v0214400.7
n.a. Plasma membrane ATPase; TAIR: AT5G62670.1 H -ATPase 11; Swiss-Prot: sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type; TrEMBL-Plants: tr|A0A151S7C9|A0A151S7C9_CAJCA Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0214400 LjG1.1_chr1 47281945 47288146 +
3 domain predictions
1 GO term
LotjaGi1g1v0329600.1
n.a. Cation-transporting ATPase; TAIR: AT5G23630.1 phosphate deficiency response 2; Swiss-Prot: sp|Q9LT02|PDR2_ARATH Probable manganese-transporting ATPase PDR2; TrEMBL-Plants: tr|A0A1J7H704|A0A1J7H704_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0329600 LjG1.1_chr1 78530370 78543732 +
2 domain predictions
1 GO term
LotjaGi1g1v0361100.1
n.a. Calcium-transporting ATPase; TAIR: AT1G27770.1 autoinhibited Ca2+-ATPase 1; Swiss-Prot: sp|Q37145|ACA1_ARATH Calcium-transporting ATPase 1, chloroplastic; TrEMBL-Plants: tr|A0A151TTM3|A0A151TTM3_CAJCA Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0361100 LjG1.1_chr1 83594166 83607222 +
3 domain predictions
1 GO term
LotjaGi1g1v0361100.2
n.a. Calcium-transporting ATPase; TAIR: AT1G27770.1 autoinhibited Ca2+-ATPase 1; Swiss-Prot: sp|Q37145|ACA1_ARATH Calcium-transporting ATPase 1, chloroplastic; TrEMBL-Plants: tr|D3YBB1|D3YBB1_TRIRP Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0361100 LjG1.1_chr1 83594575 83603604 +
3 domain predictions
1 GO term
LotjaGi1g1v0361100.3
n.a. Calcium-transporting ATPase; TAIR: AT1G27770.1 autoinhibited Ca2+-ATPase 1; Swiss-Prot: sp|Q37145|ACA1_ARATH Calcium-transporting ATPase 1, chloroplastic; TrEMBL-Plants: tr|A0A0L9UI45|A0A0L9UI45_PHAAN Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0361100 LjG1.1_chr1 83594575 83604327 +
3 domain predictions
1 GO term
LotjaGi1g1v0362300.1
n.a. Calcium-transporting ATPase; TAIR: AT1G10130.1 endoplasmic reticulum-type calcium-transporting ATPase 3; Swiss-Prot: sp|Q9SY55|ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type; TrEMBL-Plants: tr|K7KI34|K7KI34_SOYBN Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0362300 LjG1.1_chr1 83717205 83741511 +
3 domain predictions
1 GO term
LotjaGi1g1v0362300.2
n.a. Calcium-transporting ATPase; TAIR: AT1G10130.1 endoplasmic reticulum-type calcium-transporting ATPase 3; Swiss-Prot: sp|Q9SY55|ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type; TrEMBL-Plants: tr|K7KI34|K7KI34_SOYBN Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0362300 LjG1.1_chr1 83717294 83743188 +
3 domain predictions
1 GO term
LotjaGi1g1v0362300.3
n.a. Calcium-transporting ATPase; TAIR: AT1G10130.1 endoplasmic reticulum-type calcium-transporting ATPase 3; Swiss-Prot: sp|Q9SY55|ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type; TrEMBL-Plants: tr|K7KI34|K7KI34_SOYBN Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0362300 LjG1.1_chr1 83722159 83741099 +
3 domain predictions
1 GO term
LotjaGi1g1v0362300.4
n.a. Calcium-transporting ATPase; TAIR: AT1G10130.1 endoplasmic reticulum-type calcium-transporting ATPase 3; Swiss-Prot: sp|Q9SY55|ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type; TrEMBL-Plants: tr|K7KI34|K7KI34_SOYBN Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0362300 LjG1.1_chr1 83722162 83741099 +
3 domain predictions
1 GO term
LotjaGi1g1v0362300.5
n.a. Calcium-transporting ATPase; TAIR: AT1G10130.1 endoplasmic reticulum-type calcium-transporting ATPase 3; Swiss-Prot: sp|Q9SY55|ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type; TrEMBL-Plants: tr|V7AX11|V7AX11_PHAVU Calcium-transporting ATPase; Found in the gene: LotjaGi1g1v0362300 LjG1.1_chr1 83722165 83735202 +
3 domain predictions
1 GO term