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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001806
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 282 results. Now displaying 3 of 6 with 50 rows per page. This search has taken 5.305s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v3114680.1
n.a. PREDICTED: ras-related protein RABA6a-like [Glycine max] gi|356524680|ref|XP_003530956.1| chr4 42073572 42076313 -
2 domain predictions
2 GO terms
Lj5g3v0670590.1
n.a. PREDICTED: ras-related protein RABC2a-like [Glycine max] gi|356533295|ref|XP_003535201.1| chr5 9724646 9727381 -
2 domain predictions
2 GO terms
Lj5g3v0975690.1
n.a. PREDICTED: mitochondrial Rho GTPase 1-like [Glycine max] gi|356535940|ref|XP_003536499.1| chr5 15085696 15095084 +
2 domain predictions
2 GO terms
Lj5g3v0975690.2
n.a. PREDICTED: mitochondrial Rho GTPase 1-like [Glycine max] gi|356535940|ref|XP_003536499.1| chr5 15087144 15095084 +
2 domain predictions
2 GO terms
Lj5g3v1275080.1
n.a. RAB11J [Lotus japonicus] gi|1370160|emb|CAA98186.1| chr5 20197505 20199263 -
2 domain predictions
2 GO terms
Lj5g3v1275090.1
n.a. n.a. chr5 20197619 20199266 -
2 domain predictions
2 GO terms
Lj5g3v1494630.1
n.a. PREDICTED: mitochondrial Rho GTPase 1-like [Glycine max] gi|356576775|ref|XP_003556505.1| chr5 21656308 21662348 +
2 domain predictions
2 GO terms
Lj5g3v1698940.1
n.a. PREDICTED: ras-related protein RABC2a-like [Glycine max] gi|356576370|ref|XP_003556305.1| chr5 24493379 24499245 -
2 domain predictions
2 GO terms
Lj5g3v1796850.1
n.a. RAB5B [Lotus japonicus] gi|1370180|emb|CAA98167.1| chr5 25675489 25680430 -
2 domain predictions
2 GO terms
Lj5g3v1889510.1
n.a. RAB7B [Lotus japonicus] gi|1370184|emb|CAA98169.1| chr5 26962508 26966746 +
2 domain predictions
2 GO terms
Lj5g3v1889520.2
n.a. RAB7B [Lotus japonicus] gi|1370184|emb|CAA98169.1| chr5 26963426 26966716 +
2 domain predictions
2 GO terms
Lj5g3v2264070.1
n.a. RAB8A [Lotus japonicus] gi|1370190|emb|CAA98172.1| chr5 33075665 33079269 +
2 domain predictions
2 GO terms
Lj5g3v2264080.1
n.a. RAB8A [Lotus japonicus] gi|1370190|emb|CAA98172.1| chr5 33075697 33079631 +
2 domain predictions
2 GO terms
Lj6g3v0366940.1
n.a. guanine nucleotide regulatory protein [Vicia faba] gi|547478|emb|CAA85733.1| chr6 3457157 3459149 +
2 domain predictions
2 GO terms
Lj6g3v0366940.2
n.a. RAB5A [Lotus japonicus] gi|1370178|emb|CAA98166.1| chr6 3457157 3461882 +
2 domain predictions
2 GO terms
Lj6g3v0366950.1
n.a. RAB5A [Lotus japonicus] gi|1370178|emb|CAA98166.1| chr6 3457185 3461965 +
2 domain predictions
2 GO terms
Lj6g3v0528530.1
n.a. PREDICTED: ras-related protein RABH1e-like [Glycine max] gi|356512701|ref|XP_003525055.1| chr6 5515202 5518693 +
2 domain predictions
2 GO terms
Lj6g3v0540630.1
n.a. n.a. chr6 5580737 5583035 +
2 domain predictions
2 GO terms
Lj6g3v1705090.1
n.a. PREDICTED: ras-related protein RABB1c-like [Glycine max] gi|356555789|ref|XP_003546212.1| chr6 19242491 19246141 -
2 domain predictions
2 GO terms
Lj6g3v1705100.1
n.a. n.a. chr6 19242668 19246167 -
2 domain predictions
2 GO terms
LotjaGi1g1v0035600.1
n.a. Ras-related GTP-binding protein, putative; TAIR: AT5G54840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1; TrEMBL-Plants: tr|I1JJ70|I1JJ70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0035600 LjG1.1_chr1 4874565 4879388 +
2 domain predictions
2 GO terms
LotjaGi1g1v0085700.1
n.a. Ras-related protein, expressed; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I1M812|I1M812_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085700 LjG1.1_chr1 12424733 12426869 +
2 domain predictions
2 GO terms
LotjaGi1g1v0085700.2
n.a. Ras family protein; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I1M812|I1M812_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085700 LjG1.1_chr1 12425861 12426358 +
2 domain predictions
2 GO terms
LotjaGi1g1v0100700.1
n.a. Ras family protein; TAIR: AT5G45130.1 Ras small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|I3S087|I3S087_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0100700 LjG1.1_chr1 15290430 15296310 -
2 domain predictions
2 GO terms
LotjaGi1g1v0100700.2
n.a. Ras family protein; TAIR: AT5G45130.1 Ras small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|I3S087|I3S087_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0100700 LjG1.1_chr1 15290974 15295964 -
2 domain predictions
2 GO terms
LotjaGi1g1v0166100.1
n.a. Ras-related protein Rab-18; TAIR: AT1G43890.1 RAB GTPASE HOMOLOG B18; Swiss-Prot: sp|O23657|RABC1_ARATH Ras-related protein RABC1; TrEMBL-Plants: tr|A0A151U1X5|A0A151U1X5_CAJCA GTP-binding protein yptV3; Found in the gene: LotjaGi1g1v0166100 LjG1.1_chr1 31519947 31525264 -
2 domain predictions
2 GO terms
LotjaGi1g1v0183200.1
n.a. Rac-like GTP binding protein; TAIR: AT3G48040.1 RHO-related protein from plants 10; Swiss-Prot: sp|Q9SU67|RAC8_ARATH Rac-like GTP-binding protein ARAC8; TrEMBL-Plants: tr|I3T588|I3T588_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0183200 LjG1.1_chr1 35691738 35696564 +
2 domain predictions
2 GO terms
LotjaGi1g1v0183200.2
n.a. Rac-like GTP-binding protein; TAIR: AT5G62880.1 RAC-like 10; Swiss-Prot: sp|O82481|RAC10_ARATH Rac-like GTP-binding protein ARAC10; TrEMBL-Plants: tr|I3T588|I3T588_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0183200 LjG1.1_chr1 35691990 35694514 +
2 domain predictions
2 GO terms
LotjaGi1g1v0183200.3
n.a. Rac-like GTP-binding protein; TAIR: AT5G62880.2 RAC-like 10; Swiss-Prot: sp|O82481|RAC10_ARATH Rac-like GTP-binding protein ARAC10; TrEMBL-Plants: tr|I3T588|I3T588_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0183200 LjG1.1_chr1 35691990 35694587 +
2 domain predictions
2 GO terms
LotjaGi1g1v0202700_LC.1
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I3SLW5|I3SLW5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0202700_LC LjG1.1_chr1 43162779 43169614 +
2 domain predictions
2 GO terms
LotjaGi1g1v0202700_LC.2
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|V7AGW0|V7AGW0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0202700_LC LjG1.1_chr1 43162779 43169614 +
2 domain predictions
2 GO terms
LotjaGi1g1v0202700_LC.3
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I3SLW5|I3SLW5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0202700_LC LjG1.1_chr1 43162859 43169613 +
2 domain predictions
2 GO terms
LotjaGi1g1v0202700_LC.4
n.a. Ras-related protein, putative; TAIR: AT3G53610.1 RAB GTPase homolog 8; Swiss-Prot: sp|O24466|RAE1A_ARATH Ras-related protein RABE1a; TrEMBL-Plants: tr|A0A078CLW6|A0A078CLW6_BRANA BnaA09g33860D protein; Found in the gene: LotjaGi1g1v0202700_LC LjG1.1_chr1 43162904 43169467 +
2 domain predictions
2 GO terms
LotjaGi1g1v0202700_LC.5
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV; TrEMBL-Plants: tr|A0A1J7HIZ8|A0A1J7HIZ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0202700_LC LjG1.1_chr1 43162904 43169467 +
2 domain predictions
2 GO terms
LotjaGi1g1v0202700_LC.6
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|V7AGW0|V7AGW0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0202700_LC LjG1.1_chr1 43162904 43169467 +
2 domain predictions
2 GO terms
LotjaGi1g1v0202700_LC.7
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|V7AGW0|V7AGW0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0202700_LC LjG1.1_chr1 43162948 43169423 +
2 domain predictions
2 GO terms
LotjaGi1g1v0374600_LC.1
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A0S3SL85|A0A0S3SL85_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0374600_LC LjG1.1_chr1 85264745 85275724 +
2 domain predictions
2 GO terms
LotjaGi1g1v0374600_LC.2
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A0S3SL85|A0A0S3SL85_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0374600_LC LjG1.1_chr1 85267442 85272810 +
2 domain predictions
2 GO terms
LotjaGi1g1v0374600_LC.3
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A0S3SL85|A0A0S3SL85_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0374600_LC LjG1.1_chr1 85267442 85272810 +
2 domain predictions
2 GO terms
LotjaGi1g1v0374600_LC.4
n.a. Ras-related protein-like protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A0S3SL85|A0A0S3SL85_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0374600_LC LjG1.1_chr1 85267442 85275687 +
2 domain predictions
2 GO terms
LotjaGi1g1v0386300.1
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|I3T626|I3T626_LOTJA GTP-binding nuclear protein; Found in the gene: LotjaGi1g1v0386300 LjG1.1_chr1 86966310 86971154 -
2 domain predictions
2 GO terms
LotjaGi1g1v0386300.2
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|A0A078HYA5|A0A078HYA5_BRANA BnaC02g09300D protein; Found in the gene: LotjaGi1g1v0386300 LjG1.1_chr1 86969309 86971009 -
2 domain predictions
2 GO terms
LotjaGi1g1v0386600.1
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|M5XCV1|M5XCV1_PRUPE GTP-binding nuclear protein; Found in the gene: LotjaGi1g1v0386600 LjG1.1_chr1 86990656 86993491 -
2 domain predictions
2 GO terms
LotjaGi1g1v0430100.1
n.a. Rac-like GTP-binding protein; TAIR: AT4G35020.1 RAC-like 3; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3T4P6|I3T4P6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0430100 LjG1.1_chr1 92508438 92512037 +
2 domain predictions
2 GO terms
LotjaGi1g1v0430100.2
n.a. Rac-like GTP-binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|A0A1D6GYV0|A0A1D6GYV0_MAIZE Uncharacterized protein; Found in the gene: LotjaGi1g1v0430100 LjG1.1_chr1 92508874 92510485 +
2 domain predictions
2 GO terms
LotjaGi1g1v0430100.3
n.a. Rac-like GTP-binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|W9QZH4|W9QZH4_9ROSA Vacuolar protein sorting-associated protein 35B; Found in the gene: LotjaGi1g1v0430100 LjG1.1_chr1 92508874 92510637 +
2 domain predictions
2 GO terms
LotjaGi1g1v0430100.4
n.a. Rac-like GTP-binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3T4P6|I3T4P6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0430100 LjG1.1_chr1 92508874 92511378 +
2 domain predictions
2 GO terms
LotjaGi1g1v0430100.5
n.a. Rac-like GTP-binding protein; TAIR: AT2G17800.1 RAC-like 1; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3T4P6|I3T4P6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0430100 LjG1.1_chr1 92508874 92511382 +
2 domain predictions
2 GO terms
LotjaGi1g1v0430200.1
n.a. Rac-like GTP-binding protein; TAIR: AT4G35020.1 RAC-like 3; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3T430|I3T430_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0430200 LjG1.1_chr1 92513237 92515667 +
2 domain predictions
2 GO terms
LotjaGi1g1v0495000.1
n.a. Ras family protein; TAIR: AT1G02130.1 RAS 5; Swiss-Prot: sp|P28188|RAD2A_ARATH Ras-related protein RABD2a; TrEMBL-Plants: tr|I3SUV4|I3SUV4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0495000 LjG1.1_chr1 100926385 100932564 +
2 domain predictions
2 GO terms