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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • IPR017907
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We have found 245 results. Now displaying 4 of 5 with 50 rows per page. This search has taken 6.162s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3SP62|I3SP62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0048100 LjG1.1_chr3 5099787 5102637 +
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G24800.1 proteolysis 1; Swiss-Prot: sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1; TrEMBL-Plants: tr|A0A151SEQ5|A0A151SEQ5_CAJCA E3 ubiquitin-protein ligase PRT1; Found in the gene: LotjaGi3g1v0081200 LjG1.1_chr3 9070869 9084672 +
n.a. E3 Ubiquitin ligase family protein; TAIR: AT3G54360.1 zinc ion binding protein; Swiss-Prot: sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR; TrEMBL-Plants: tr|K7KJR6|K7KJR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0102500 LjG1.1_chr3 12720727 12728865 -
n.a. E3 Ubiquitin ligase family protein; TAIR: AT3G54360.1 zinc ion binding protein; Swiss-Prot: sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR; TrEMBL-Plants: tr|A0A151SYU1|A0A151SYU1_CAJCA E3 ubiquitin-protein ligase CHFR; Found in the gene: LotjaGi3g1v0102500 LjG1.1_chr3 12723456 12728184 -
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381294 13406224 +
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A1J7IRE0|A0A1J7IRE0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13385193 +
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
n.a. SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; TAIR: AT3G54460.1 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; Swiss-Prot: sp|Q9M1I1|FB304_ARATH F-box protein At3g54460; TrEMBL-Plants: tr|A0A0B2QMB3|A0A0B2QMB3_GLYSO F-box protein; Found in the gene: LotjaGi3g1v0111300 LjG1.1_chr3 13742280 13749329 -
n.a. SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; TAIR: AT3G54460.1 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; Swiss-Prot: sp|Q9M1I1|FB304_ARATH F-box protein At3g54460; TrEMBL-Plants: tr|A0A0B2QMB3|A0A0B2QMB3_GLYSO F-box protein; Found in the gene: LotjaGi3g1v0111300 LjG1.1_chr3 13742459 13749254 -
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15104496 15111565 -
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15108555 15110555 -
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15108555 15110569 -
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15109575 15110555 -
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|I1MJM7|I1MJM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123500 LjG1.1_chr3 15115239 15119288 -
n.a. DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr|A0A072VAY9|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500 LjG1.1_chr3 23835364 23852693 +
n.a. DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr|A0A072VAY9|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500 LjG1.1_chr3 23835493 23851837 +
n.a. E3 ubiquitin-protein ligase Hakai; TAIR: AT5G01160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZHZ4|HAKAI_CHICK E3 ubiquitin-protein ligase Hakai; TrEMBL-Plants: tr|I1N2T3|I1N2T3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0202800 LjG1.1_chr3 29625021 29630173 +
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G72175.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232); Swiss-Prot: sp|Q7SZN2|RN170_DANRE E3 ubiquitin-protein ligase RNF170; TrEMBL-Plants: tr|I3S319|I3S319_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0335600 LjG1.1_chr3 70561052 70563786 -
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600 LjG1.1_chr3 75030850 75036939 +
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600 LjG1.1_chr3 75030850 75036964 +
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|K7LTH2|K7LTH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364700_LC LjG1.1_chr3 75038670 75042844 +
n.a. Peroxisome biogenesis protein 2; TAIR: AT1G79810.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2; TrEMBL-Plants: tr|G7LFV7|G7LFV7_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi3g1v0368100 LjG1.1_chr3 75447175 75451107 -
n.a. Peroxisome biogenesis protein 2; TAIR: AT1G79810.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2; TrEMBL-Plants: tr|A0A151SHE5|A0A151SHE5_CAJCA Peroxisome assembly protein 2; Found in the gene: LotjaGi3g1v0368100 LjG1.1_chr3 75447861 75450699 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|V7BV69|V7BV69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0443900 LjG1.1_chr3 85707689 85710447 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A0L9UMA5|A0A0L9UMA5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0444000_LC LjG1.1_chr3 85718815 85720898 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A0L9UMA5|A0A0L9UMA5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0444000_LC LjG1.1_chr3 85718839 85720970 -
n.a. Ring finger protein, putative; TAIR: AT5G44280.1 RING 1A; Swiss-Prot: sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a; TrEMBL-Plants: tr|K7LW36|K7LW36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0446000 LjG1.1_chr3 85923607 85932381 +
n.a. E3 ubiquitin-protein ligase; TAIR: AT5G44280.1 RING 1A; Swiss-Prot: sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a; TrEMBL-Plants: tr|I1LS58|I1LS58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0452100 LjG1.1_chr3 86562161 86575753 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A072U1G6|A0A072U1G6_MEDTR E3 ubiquitin-protein ligase RMA1H1-like protein; Found in the gene: LotjaGi3g1v0454700 LjG1.1_chr3 86803262 86811366 +
n.a. DNA/RNA helicase; TAIR: AT1G05120.1 Helicase protein with RING/U-box domain-containing protein; Swiss-Prot: sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16; TrEMBL-Plants: tr|A0A1J7HBU3|A0A1J7HBU3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0467700 LjG1.1_chr3 88335417 88344867 +
n.a. DNA/RNA helicase protein; TAIR: AT1G02670.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16; TrEMBL-Plants: tr|A0A151RMT2|A0A151RMT2_CAJCA ATP-dependent helicase rhp16; Found in the gene: LotjaGi3g1v0469700 LjG1.1_chr3 88508315 88515468 -
n.a. RING/U-box superfamily protein, putative; TAIR: AT5G48655.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9QZS2|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4; TrEMBL-Plants: tr|I1LIV9|I1LIV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0525700 LjG1.1_chr3 94241069 94245751 +
n.a. DWNN domain, a CCHC-type zinc finger; TAIR: AT5G47430.2 DWNN domain, a CCHC-type zinc finger; Swiss-Prot: sp|A2ASS6|TITIN_MOUSE Titin; TrEMBL-Plants: tr|A0A151TLQ9|A0A151TLQ9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550600 LjG1.1_chr3 96747445 96759886 -
n.a. SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT1G61140.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|A0A1J7HC54|A0A1J7HC54_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0052100 LjG1.1_chr4 6288932 6303067 +
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I1KLI6|I1KLI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 LjG1.1_chr4 6635270 6640189 +
n.a. RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|I3T4Q8|I3T4Q8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 LjG1.1_chr4 6635605 6637188 +
n.a. RING finger protein; TAIR: AT3G47160.2 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I1KLI6|I1KLI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 LjG1.1_chr4 6636277 6638612 +
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I1M0C0|I1M0C0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 LjG1.1_chr4 6636327 6638612 +
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q3UIR3|DTX3L_MOUSE E3 ubiquitin-protein ligase DTX3L; TrEMBL-Plants: tr|I3T4Q8|I3T4Q8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900 LjG1.1_chr4 6636427 6637165 +
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A0S3QZJ1|A0A0S3QZJ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055700 LjG1.1_chr4 6706543 6708325 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G03770.1 RING 1B; Swiss-Prot: sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b; TrEMBL-Plants: tr|A0A072UYT1|A0A072UYT1_MEDTR E3 ubiquitin-protein ligase RING1a-like protein, putative; Found in the gene: LotjaGi4g1v0058600 LjG1.1_chr4 7064822 7069244 +
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q14527|HLTF_HUMAN Helicase-like transcription factor; TrEMBL-Plants: tr|I3SIL6|I3SIL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0224700 LjG1.1_chr4 53049099 53051783 +
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47; TrEMBL-Plants: tr|I3SIL6|I3SIL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0224700 LjG1.1_chr4 53049099 53053556 +
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3SIL6|I3SIL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0224700 LjG1.1_chr4 53049183 53053549 +
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47; TrEMBL-Plants: tr|I3SIL6|I3SIL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0224700 LjG1.1_chr4 53049708 53053696 +
n.a. RING/U-box protein; TAIR: AT3G05670.1 RING/U-box protein; Swiss-Prot: sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1; TrEMBL-Plants: tr|A0A072UQF4|A0A072UQF4_MEDTR PHD-finger protein, putative; Found in the gene: LotjaGi4g1v0257700 LjG1.1_chr4 61318075 61321452 -
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 LjG1.1_chr4 64882147 64886907 -
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G57740.1 hypothetical protein; Swiss-Prot: sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32; TrEMBL-Plants: tr|G7JEC0|G7JEC0_MEDTR E3 ubiquitin-protein ligase XBOS32; Found in the gene: LotjaGi4g1v0294800 LjG1.1_chr4 66709138 66715155 -
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|A0A151U8S4|A0A151U8S4_CAJCA RING finger protein 141; Found in the gene: LotjaGi4g1v0362600 LjG1.1_chr4 74148648 74151324 -