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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019786
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 200 results. Now displaying 2 of 4 with 50 rows per page. This search has taken 5.941s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2441840.2
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi|356522510|ref|XP_003529889.1| chr3 30108466 30118179 -
2 domain predictions
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Lj3g3v2658830.1
n.a. PHD1 [Glycine max] gi|351727220|ref|NP_001237921.1| chr3 32349721 32353111 +
2 domain predictions
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Lj3g3v3016640.1
n.a. Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357472039|ref|XP_003606304.1| chr3 37709742 37720386 +
2 domain predictions
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Lj3g3v3031030.1
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 3 [Theobroma cacao] gi|508716123|gb|EOY08020.1| chr3 37888359 37891338 +
2 domain predictions
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Lj3g3v3579340.1
n.a. Chromodomain helicase DNA binding protein [Medicago truncatula] gi|357474041|ref|XP_003607305.1| chr3 43445330 43464444 +
2 domain predictions
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Lj3g3v3690060.1
n.a. PHD finger family protein isoform 1 [Theobroma cacao] gi|508704765|gb|EOX96661.1| chr3 44855860 44872173 -
2 domain predictions
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Lj3g3v3752160.1
n.a. n.a. chr3 45374178 45381725 +
2 domain predictions
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Lj3g3v3752170.1
n.a. PREDICTED: PHD finger protein At1g33420-like [Glycine max] gi|356531716|ref|XP_003534422.1| chr3 45378276 45381725 -
2 domain predictions
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Lj4g3v0037550.1
n.a. PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1| chr4 354777 357926 -
2 domain predictions
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Lj4g3v0244050.1
n.a. Chromatin remodeling complex subunit [Theobroma cacao] gi|508704985|gb|EOX96881.1| chr4 2917943 2935630 -
2 domain predictions
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Lj4g3v1214960.1
n.a. n.a. chr4 18057373 18058913 -
2 domain predictions
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Lj4g3v1909910.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| chr4 27054406 27058264 -
2 domain predictions
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Lj4g3v2137100.1
n.a. PREDICTED: pathogenesis-related homeodomain protein-like [Glycine max] gi|356550724|ref|XP_003543734.1| chr4 29355873 29361185 +
2 domain predictions
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Lj4g3v2179230.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera] gi|359484453|ref|XP_003633111.1| chr4 30122457 30125960 -
2 domain predictions
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Lj5g3v0455900.1
n.a. PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| chr5 4420969 4427537 -
2 domain predictions
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Lj5g3v0614410.1
n.a. Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|358346906|ref|XP_003637505.1| chr5 7225752 7235216 +
2 domain predictions
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Lj5g3v1259870.2
n.a. PREDICTED: dentin sialophosphoprotein-like isoform X1 [Cicer arietinum] gi|502116601|ref|XP_004495510.1| chr5 20077760 20086849 -
2 domain predictions
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Lj5g3v1960150.1
n.a. Uncharacterized protein TCM_035488 [Theobroma cacao] gi|508724764|gb|EOY16661.1| chr5 27742637 27745748 +
2 domain predictions
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Lj5g3v2046070.1
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi|334186543|ref|NP_193228.6| chr5 29462770 29470312 -
2 domain predictions
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Lj5g3v2112070.1
n.a. PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 [Cicer arietinum] gi|502120282|ref|XP_004496910.1| chr5 30259229 30267369 +
2 domain predictions
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Lj5g3v2112070.3
n.a. PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 [Cicer arietinum] gi|502120282|ref|XP_004496910.1| chr5 30263234 30267369 +
2 domain predictions
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Lj6g3v0521560.1
n.a. PREDICTED: NF-X1-type zinc finger protein NFXL2-like [Cicer arietinum] gi|502129986|ref|XP_004500492.1| chr6 5063971 5080255 -
2 domain predictions
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Lj6g3v1211470.1
n.a. PHD finger protein [Zea mays] gi|195637710|gb|ACG38323.1| chr6 14987928 14989275 +
2 domain predictions
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Lj6g3v1333010.1
n.a. PREDICTED: pathogenesis-related homeodomain protein-like [Cicer arietinum] gi|502085745|ref|XP_004487993.1| chr6 15869131 15881270 -
2 domain predictions
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Lj6g3v1333010.2
n.a. PREDICTED: pathogenesis-related homeodomain protein-like [Cicer arietinum] gi|502085745|ref|XP_004487993.1| chr6 15869131 15881270 -
2 domain predictions
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Lj6g3v1604030.1
n.a. PREDICTED: protein AF-17-like isoform X2 [Cicer arietinum] gi|502166098|ref|XP_004513789.1| chr6 18095197 18097377 +
2 domain predictions
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Lj6g3v1604030.2
n.a. PREDICTED: protein AF-17-like isoform X1 [Cicer arietinum] gi|502166095|ref|XP_004513788.1| chr6 18095197 18097377 +
2 domain predictions
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LotjaGi1g1v0004400.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 804738 813954 +
2 domain predictions
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LotjaGi1g1v0004400.2
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 806178 813954 +
2 domain predictions
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LotjaGi1g1v0096400.1
n.a. PHD finger protein family; TAIR: AT1G66170.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q7X6Y7|MMD1_ARATH PHD finger protein MALE MEIOCYTE DEATH 1; TrEMBL-Plants: tr|A0A151RBP6|A0A151RBP6_CAJCA PHD finger protein family; Found in the gene: LotjaGi1g1v0096400 LjG1.1_chr1 14600120 14603294 +
2 domain predictions
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LotjaGi1g1v0130300_LC.2
n.a. PHD finger protein family; TAIR: AT2G40770.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Swiss-Prot: sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH; TrEMBL-Plants: tr|A0A1J7GV35|A0A1J7GV35_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0130300_LC LjG1.1_chr1 20932164 20941645 +
2 domain predictions
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LotjaGi1g1v0131200.1
n.a. E3 ubiquitin-protein ligase SHPRH; TAIR: AT2G40770.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Swiss-Prot: sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH; TrEMBL-Plants: tr|I1JH54|I1JH54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131200 LjG1.1_chr1 21048411 21074533 +
2 domain predictions
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LotjaGi1g1v0131200.2
n.a. E3 ubiquitin-protein ligase SHPRH; TAIR: AT2G40770.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Swiss-Prot: sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH; TrEMBL-Plants: tr|I1JH54|I1JH54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131200 LjG1.1_chr1 21048478 21070075 +
2 domain predictions
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LotjaGi1g1v0131200.3
n.a. E3 ubiquitin-protein ligase SHPRH; TAIR: AT2G40770.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Swiss-Prot: sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH; TrEMBL-Plants: tr|I1JH54|I1JH54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131200 LjG1.1_chr1 21049077 21069777 +
2 domain predictions
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LotjaGi1g1v0226000_LC.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|A0A151TYG2|A0A151TYG2_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0226000_LC LjG1.1_chr1 52330652 52343925 +
2 domain predictions
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LotjaGi1g1v0226000_LC.6
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|A0A151TYG2|A0A151TYG2_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0226000_LC LjG1.1_chr1 52330766 52338763 +
2 domain predictions
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LotjaGi1g1v0249800.1
n.a. Phd finger protein, putative; TAIR: AT1G77800.1 PHD finger family protein; Swiss-Prot: sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros; TrEMBL-Plants: tr|A0A0R0KNZ6|A0A0R0KNZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0249800 LjG1.1_chr1 60044466 60056959 -
2 domain predictions
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LotjaGi1g1v0265300_LC.1
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14686|KMT2D_HUMAN Histone-lysine N-methyltransferase 2D; TrEMBL-Plants: tr|K7LN08|K7LN08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0265300_LC LjG1.1_chr1 64821040 64829748 +
2 domain predictions
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LotjaGi1g1v0265300_LC.2
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14686|KMT2D_HUMAN Histone-lysine N-methyltransferase 2D; TrEMBL-Plants: tr|K7LN08|K7LN08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0265300_LC LjG1.1_chr1 64821125 64829062 +
2 domain predictions
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LotjaGi1g1v0265300_LC.3
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT3G02890.3 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14686|KMT2D_HUMAN Histone-lysine N-methyltransferase 2D; TrEMBL-Plants: tr|A0A1J7H449|A0A1J7H449_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0265300_LC LjG1.1_chr1 64824676 64826679 +
2 domain predictions
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LotjaGi1g1v0284200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|I1JYS9|I1JYS9_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0284200 LjG1.1_chr1 69176904 69188234 -
2 domain predictions
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LotjaGi1g1v0317100.1
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O91734|POLG_EC01F Genome polyprotein; TrEMBL-Plants: tr|K7KLI5|K7KLI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0317100 LjG1.1_chr1 76418050 76423787 +
2 domain predictions
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LotjaGi1g1v0317100.2
n.a. RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O91734|POLG_EC01F Genome polyprotein; TrEMBL-Plants: tr|K7KLI5|K7KLI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0317100 LjG1.1_chr1 76418301 76423768 +
2 domain predictions
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LotjaGi1g1v0317200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G09790.1 TRITHORAX-RELATED PROTEIN 5; Swiss-Prot: sp|B9RU15|ATXR5_RICCO Probable Histone-lysine N-methyltransferase ATXR5; TrEMBL-Plants: tr|I1JY36|I1JY36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0317200 LjG1.1_chr1 76429484 76436232 +
2 domain predictions
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LotjaGi1g1v0369600.1
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 LjG1.1_chr1 84778256 84783484 -
2 domain predictions
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LotjaGi1g1v0369600.2
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 LjG1.1_chr1 84778775 84779440 -
2 domain predictions
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LotjaGi1g1v0369600.3
n.a. PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 LjG1.1_chr1 84778775 84783173 -
2 domain predictions
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LotjaGi1g1v0378800.1
n.a. Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.2 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr|A0A151TT78|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800 LjG1.1_chr1 85909793 85928018 +
2 domain predictions
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LotjaGi1g1v0378800.2
n.a. Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.1 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr|A0A151TT78|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800 LjG1.1_chr1 85909793 85928018 +
2 domain predictions
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LotjaGi1g1v0378800.3
n.a. Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.2 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr|A0A151TT78|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800 LjG1.1_chr1 85909807 85928015 +
2 domain predictions
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