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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002110
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We have found 302 results. Now displaying 3 of 7 with 50 rows per page. This search has taken 5.288s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v2015060.2
n.a. PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max] gi|356575939|ref|XP_003556093.1| chr5 28491828 28496373 -
3 domain predictions
1 GO term
Lj5g3v2288690.1
n.a. IGN1 [Lotus japonicus] gi|128168562|dbj|BAF48666.1| chr5 33342249 33346004 +
3 domain predictions
1 GO term
Lj5g3v2288700.1
n.a. IGN1 [Lotus japonicus] gi|128168562|dbj|BAF48666.1| chr5 33342353 33346079 +
3 domain predictions
1 GO term
Lj6g3v0528550.1
n.a. PREDICTED: calmodulin-binding transcription activator 3-like [Glycine max] gi|356511089|ref|XP_003524262.1| chr6 5524984 5536018 +
3 domain predictions
1 GO term
Lj6g3v0803350.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357494239|ref|XP_003617408.1| chr6 7958344 7961639 -
2 domain predictions
1 GO term
Lj6g3v0920040.1
n.a. Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| chr6 9072940 9078681 -
3 domain predictions
1 GO term
Lj6g3v0959380.1
n.a. PREDICTED: protein TANC1-like [Cicer arietinum] gi|502166647|ref|XP_004513946.1| chr6 10740673 10743933 +
4 domain predictions
1 GO term
Lj6g3v1239500.1
n.a. PREDICTED: LOW QUALITY PROTEIN: regulatory protein NPR1-like [Glycine max] gi|356532734|ref|XP_003534926.1| chr6 15307972 15309235 +
3 domain predictions
1 GO term
Lj6g3v1371870.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Fragaria vesca subsp]. vesca] gi|470110661|ref|XP_004291592.1| chr6 16274397 16279874 +
3 domain predictions
1 GO term
Lj6g3v1371880.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16282599 16286916 +
3 domain predictions
1 GO term
Lj6g3v1371880.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16282634 16286916 +
3 domain predictions
1 GO term
Lj6g3v1382400.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16515685 16517662 -
2 domain predictions
1 GO term
Lj6g3v1559270.1
n.a. Calmodulin-binding transcription activator [Medicago truncatula] gi|357449029|ref|XP_003594790.1| chr6 17754165 17764156 +
3 domain predictions
1 GO term
Lj6g3v1692500.1
n.a. NPR1-1 protein [Glycine max] gi|351726319|ref|NP_001238658.1| chr6 18835132 18841561 +
3 domain predictions
1 GO term
Lj6g3v1790940.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 20075747 20082460 +
2 domain predictions
1 GO term
Lj6g3v1790940.2
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 20075747 20081556 +
2 domain predictions
1 GO term
Lj6g3v1873590.1
n.a. PREDICTED: ankyrin repeat domain-containing protein 13C-like [Cicer arietinum] gi|502079136|ref|XP_004486165.1| chr6 20451776 20454291 +
3 domain predictions
1 GO term
Lj6g3v1916090.1
n.a. Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|357447499|ref|XP_003594025.1| chr6 21651661 21656478 +
3 domain predictions
1 GO term
Lj6g3v1934080.1
n.a. PREDICTED: potassium channel KAT1-like isoform X3 [Cicer arietinum] gi|502078700|ref|XP_004486028.1| chr6 22036446 22039527 +
2 domain predictions
1 GO term
Lj6g3v1966790.2
n.a. PREDICTED: probable serine/threonine-protein kinase drkB-like [Glycine max] gi|356555470|ref|XP_003546054.1| chr6 22633093 22642387 -
3 domain predictions
1 GO term
Lj6g3v1968130.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 22807598 22811621 -
2 domain predictions
1 GO term
Lj6g3v1969160.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 22820745 22821292 -
2 domain predictions
1 GO term
Lj6g3v2218220.1
n.a. Calmodulin-binding transcription activator [Medicago truncatula] gi|357445841|ref|XP_003593198.1| chr6 25685038 25693925 -
3 domain predictions
1 GO term
Lj6g3v2274490.1
n.a. Potassium channel [Medicago truncatula] gi|357445481|ref|XP_003593018.1| chr6 26475069 26482462 +
4 domain predictions
1 GO term
Lj6g3v2274590.1
n.a. PREDICTED: LOW QUALITY PROTEIN: potassium channel AKT2/3-like [Cicer arietinum] gi|502076890|ref|XP_004485488.1| chr6 26507978 26511739 +
4 domain predictions
1 GO term
LotjaGi1g1v0032800.1
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.2 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A151THD2|A0A151THD2_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0032800 LjG1.1_chr1 4189030 4193520 -
2 domain predictions
1 GO term
LotjaGi1g1v0039800.1
n.a. Protein kinase, putative; TAIR: AT3G58760.1 Integrin-linked protein kinase family; Swiss-Prot: sp|Q8RWL6|STY17_ARATH Serine/threonine-protein kinase STY17; TrEMBL-Plants: tr|I1JJ60|I1JJ60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0039800 LjG1.1_chr1 5536247 5542065 +
3 domain predictions
1 GO term
LotjaGi1g1v0045800.1
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q0JJ01|NPR2_ORYSJ BTB/POZ domain and ankyrin repeat-containing protein NPR2; TrEMBL-Plants: tr|I1M705|I1M705_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0045800 LjG1.1_chr1 6271139 6280773 -
3 domain predictions
1 GO term
LotjaGi1g1v0053100.1
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR4; TrEMBL-Plants: tr|A0A151QZ69|A0A151QZ69_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0053100 LjG1.1_chr1 7475909 7486034 +
2 domain predictions
1 GO term
LotjaGi1g1v0053100.2
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A151QZ69|A0A151QZ69_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0053100 LjG1.1_chr1 7483661 7486025 +
2 domain predictions
1 GO term
LotjaGi1g1v0067000.1
n.a. Ankyrin repeat-containing protein; TAIR: AT3G18670.2 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A072UEY7|A0A072UEY7_MEDTR Ankyrin repeat protein; Found in the gene: LotjaGi1g1v0067000 LjG1.1_chr1 9199961 9211370 -
3 domain predictions
1 GO term
LotjaGi1g1v0074700.1
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT2G03430.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q08DV6|ASB3_BOVIN Ankyrin repeat and SOCS box protein 3; TrEMBL-Plants: tr|I1JIE8|I1JIE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0074700 LjG1.1_chr1 10801351 10803782 -
4 domain predictions
1 GO term
LotjaGi1g1v0077000.1
n.a. Zinc finger CCCH domain protein, putative; TAIR: AT2G40140.1 zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29; TrEMBL-Plants: tr|V7BA69|V7BA69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0077000 LjG1.1_chr1 11099739 11103417 -
3 domain predictions
1 GO term
LotjaGi1g1v0096100.1
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14566954 14578142 +
4 domain predictions
1 GO term
LotjaGi1g1v0096100.2
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14571761 14577342 +
4 domain predictions
1 GO term
LotjaGi1g1v0119800.1
n.a. Zinc finger CCCH domain protein, putative; TAIR: AT5G58620.1 zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66; TrEMBL-Plants: tr|I1JHD2|I1JHD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0119800 LjG1.1_chr1 18891609 18895484 -
3 domain predictions
1 GO term
LotjaGi1g1v0214300.1
n.a. Ankyrin repeat domain-containing protein; TAIR: AT5G40160.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9SQK3|EM506_ARATH Ankyrin repeat domain-containing protein EMB506, chloroplastic; TrEMBL-Plants: tr|A0A151U9M3|A0A151U9M3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214300 LjG1.1_chr1 47267834 47278488 +
4 domain predictions
1 GO term
LotjaGi1g1v0289200.1
n.a. Acyl-CoA-binding domain protein; TAIR: AT4G27780.1 acyl-CoA binding protein 2; Swiss-Prot: sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2; TrEMBL-Plants: tr|I1KAV2|I1KAV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0289200 LjG1.1_chr1 70080517 70086426 -
4 domain predictions
1 GO term
LotjaGi1g1v0333600.1
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT5G61980.1 ARF-GAP domain 1; Swiss-Prot: sp|Q9FIT8|AGD1_ARATH ADP-ribosylation factor GTPase-activating protein AGD1; TrEMBL-Plants: tr|I1JXQ4|I1JXQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333600 LjG1.1_chr1 79188440 79196953 +
3 domain predictions
1 GO term
LotjaGi1g1v0360600.1
n.a. Ankyrin repeat family protein; TAIR: AT5G65860.2 ankyrin repeat family protein; Swiss-Prot: sp|P0CQ69|RMT2_CRYNB Protein arginine N-methyltransferase 2; TrEMBL-Plants: tr|A0A1J7HQ34|A0A1J7HQ34_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0360600 LjG1.1_chr1 83546990 83549582 +
3 domain predictions
1 GO term
LotjaGi1g1v0374700.1
n.a. Ankyrin repeat-containing protein family; TAIR: AT4G10720.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q8GYH5|BAD1_ARATH Ankyrin repeat-containing protein BDA1; TrEMBL-Plants: tr|I1JU42|I1JU42_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0374700 LjG1.1_chr1 85283442 85285603 -
3 domain predictions
1 GO term
LotjaGi1g1v0387000.1
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|K7KIL1|K7KIL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387000 LjG1.1_chr1 87027876 87035600 -
3 domain predictions
1 GO term
LotjaGi1g1v0463900.1
n.a. Ankyrin repeat and zinc finger domain-containing protein 1; TAIR: AT1G01930.1 zinc finger protein-like protein; Swiss-Prot: sp|Q66H85|ANKZ1_RAT Ankyrin repeat and zinc finger domain-containing protein 1; TrEMBL-Plants: tr|I1L6T5|I1L6T5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0463900 LjG1.1_chr1 96937724 96945263 -
2 domain predictions
1 GO term
LotjaGi1g1v0528600.1
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT5G13300.1 ARF GTPase-activating protein; Swiss-Prot: sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3; TrEMBL-Plants: tr|A0A151TCR5|A0A151TCR5_CAJCA ADP-ribosylation factor GTPase-activating protein AGD3; Found in the gene: LotjaGi1g1v0528600 LjG1.1_chr1 105531447 105542646 +
3 domain predictions
1 GO term
LotjaGi1g1v0528600.2
n.a. ADP-ribosylation factor GTPase-activating protein; TAIR: AT5G13300.1 ARF GTPase-activating protein; Swiss-Prot: sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3; TrEMBL-Plants: tr|A0A151TCR5|A0A151TCR5_CAJCA ADP-ribosylation factor GTPase-activating protein AGD3; Found in the gene: LotjaGi1g1v0528600 LjG1.1_chr1 105533038 105540681 +
3 domain predictions
1 GO term
LotjaGi1g1v0619200.1
n.a. Ankyrin repeat protein; TAIR: AT3G01750.1 Ankyrin repeat family protein; Swiss-Prot: sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A; TrEMBL-Plants: tr|A0A151T8L9|A0A151T8L9_CAJCA Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A; Found in the gene: LotjaGi1g1v0619200 LjG1.1_chr1 116611470 116615767 +
3 domain predictions
1 GO term
LotjaGi1g1v0621100.1
n.a. Ankyrin repeat; TAIR: AT5G14230.1 ankyrin; Swiss-Prot: sp|O70511|ANK3_RAT Ankyrin-3; TrEMBL-Plants: tr|A0A151RJD0|A0A151RJD0_CAJCA Putative ankyrin repeat protein RF-0381; Found in the gene: LotjaGi1g1v0621100 LjG1.1_chr1 116855032 116860967 -
3 domain predictions
1 GO term
LotjaGi1g1v0621100.2
n.a. Ankyrin repeat; TAIR: AT5G14230.1 ankyrin; Swiss-Prot: sp|Q8C8R3|ANK2_MOUSE Ankyrin-2; TrEMBL-Plants: tr|A0A151RJD0|A0A151RJD0_CAJCA Putative ankyrin repeat protein RF-0381; Found in the gene: LotjaGi1g1v0621100 LjG1.1_chr1 116855343 116858290 -
4 domain predictions
1 GO term
LotjaGi1g1v0621100.3
n.a. Ankyrin repeat; TAIR: AT5G14230.1 ankyrin; Swiss-Prot: sp|Q8C8R3|ANK2_MOUSE Ankyrin-2; TrEMBL-Plants: tr|A0A151RJD0|A0A151RJD0_CAJCA Putative ankyrin repeat protein RF-0381; Found in the gene: LotjaGi1g1v0621100 LjG1.1_chr1 116855343 116858766 -
4 domain predictions
1 GO term
LotjaGi1g1v0644600.1
n.a. Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; TAIR: AT3G03790.2 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q6NRS1|IBTK_XENLA Inhibitor of Bruton tyrosine kinase; TrEMBL-Plants: tr|K7MXV6|K7MXV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0644600 LjG1.1_chr1 120189530 120200300 -
3 domain predictions
1 GO term