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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003593
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1047 results. Now displaying 6 of 21 with 50 rows per page. This search has taken 6.689s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2995710.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 4B-like [Cicer arietinum] gi|502145742|ref|XP_004506158.1| chr3 37203040 37207616 +
2 domain predictions
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Lj3g3v3066900.1
n.a. PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max] gi|356543500|ref|XP_003540198.1| chr3 38336260 38340503 +
2 domain predictions
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Lj3g3v3066900.2
n.a. PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max] gi|356543500|ref|XP_003540198.1| chr3 38336625 38340503 +
2 domain predictions
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Lj3g3v3067920.1
n.a. PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356543494|ref|XP_003540195.1| chr3 38349614 38354105 +
2 domain predictions
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Lj3g3v3082280.1
n.a. PREDICTED: ABC transporter G family member 28-like [Cicer arietinum] gi|502145594|ref|XP_004506093.1| chr3 38473119 38478284 +
2 domain predictions
 –
Lj3g3v3213280.1
n.a. AAA-metalloprotease FtsH [Pisum sativum] gi|15021761|gb|AAK77908.1|AF397903_1 chr3 39659103 39679882 -
2 domain predictions
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Lj3g3v3213280.2
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like isoform X1 [Cicer arietinum] gi|502148467|ref|XP_004507174.1| chr3 39674546 39679947 -
2 domain predictions
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Lj3g3v3312800.2
n.a. PREDICTED: ATPase family AAA domain-containing protein 2B-like [Glycine max] gi|356545489|ref|XP_003541174.1| chr3 40362934 40370361 -
2 domain predictions
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Lj3g3v3513510.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao] gi|508707249|gb|EOX99145.1| chr3 42773598 42791844 -
2 domain predictions
 –
Lj3g3v3513510.2
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao] gi|508707249|gb|EOX99145.1| chr3 42773598 42791844 -
2 domain predictions
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Lj3g3v3599510.1
n.a. PREDICTED: ABC transporter G family member 15-like [Glycine max] gi|356543642|ref|XP_003540269.1| chr3 43565050 43573973 +
2 domain predictions
 –
Lj3g3v3639680.1
n.a. PREDICTED: ATPase family AAA domain-containing protein 3-B-like [Glycine max] gi|356543350|ref|XP_003540124.1| chr3 44198160 44201851 +
2 domain predictions
 –
Lj4g3v0014220.1
n.a. PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Fragaria vesca subsp]. vesca] gi|470128173|ref|XP_004300022.1| chr4 191560 195873 -
2 domain predictions
 –
Lj4g3v0037530.1
n.a. trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1| chr4 340964 350907 -
2 domain predictions
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Lj4g3v0047620.1
n.a. trichome branching-like protein [Gossypium arboreum] gi|395399800|gb|AFN58239.1| chr4 384932 387073 -
2 domain predictions
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Lj4g3v0243990.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like [Cicer arietinum] gi|502141848|ref|XP_004504668.1| chr4 2886919 2890463 +
2 domain predictions
 –
Lj4g3v0258690.1
n.a. PREDICTED: DNA replication licensing factor MCM3 homolog [Cicer arietinum] gi|502141886|ref|XP_004504687.1| chr4 3199415 3205112 -
2 domain predictions
 –
Lj4g3v0343340.1
n.a. PREDICTED: ABC transporter G family member 11-like [Glycine max] gi|356551120|ref|XP_003543926.1| chr4 4662338 4666356 -
2 domain predictions
 –
Lj4g3v0445350.1
n.a. Disease resistance protein [Medicago truncatula] gi|357475945|ref|XP_003608258.1| chr4 5755330 5760121 +
2 domain predictions
 –
Lj4g3v0445360.1
n.a. Disease resistance protein [Medicago truncatula] gi|357475945|ref|XP_003608258.1| chr4 5760331 5762842 +
2 domain predictions
 –
Lj4g3v0451140.2
n.a. PREDICTED: vesicle-fusing ATPase-like [Glycine max] gi|356521353|ref|XP_003529321.1| chr4 6617397 6625368 -
2 domain predictions
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Lj4g3v0510210.1
n.a. Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi|508778637|gb|EOY25893.1| chr4 8700463 8704337 -
2 domain predictions
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Lj4g3v0668230.1
n.a. PREDICTED: peroxisome biogenesis protein 1-like [Glycine max] gi|356521604|ref|XP_003529444.1| chr4 10946287 10966273 -
2 domain predictions
 –
Lj4g3v0668230.2
n.a. PREDICTED: peroxisome biogenesis protein 1-like [Glycine max] gi|356521604|ref|XP_003529444.1| chr4 10948342 10959489 -
2 domain predictions
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Lj4g3v1376890.1
n.a. PREDICTED: replication factor C subunit 2-like [Glycine max] gi|356514052|ref|XP_003525721.1| chr4 21170706 21174578 -
2 domain predictions
 –
Lj4g3v1599280.1
n.a. AAA-ATPase 1-like protein [Medicago truncatula] gi|357504229|ref|XP_003622403.1| chr4 23521777 23523878 +
2 domain predictions
 –
Lj4g3v1617880.1
n.a. PREDICTED: ABC transporter A family member 7-like isoform X1 [Cicer arietinum] gi|502126775|ref|XP_004499432.1| chr4 23839404 23859810 -
2 domain predictions
 –
Lj4g3v1617880.2
n.a. PREDICTED: ABC transporter A family member 7-like isoform X1 [Cicer arietinum] gi|502126775|ref|XP_004499432.1| chr4 23839404 23849107 -
2 domain predictions
 –
Lj4g3v1687570.1
n.a. heat shock protein [Glycine max] gi|351725607|ref|NP_001238122.1| chr4 24581778 24585718 +
2 domain predictions
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Lj4g3v1722980.2
n.a. PREDICTED: ABC transporter B family member 25-like [Glycine max] gi|356513473|ref|XP_003525438.1| chr4 24803332 24809054 -
2 domain predictions
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Lj4g3v1800250.1
n.a. PREDICTED: ABC transporter G family member 32-like [Cicer arietinum] gi|502151680|ref|XP_004508560.1| chr4 25446426 25456079 +
2 domain predictions
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Lj4g3v1983620.1
n.a. Signal recognition particle receptor subunit alpha [Medicago truncatula] gi|357480047|ref|XP_003610309.1| chr4 27655277 27659613 -
2 domain predictions
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Lj4g3v2215340.1
n.a. PREDICTED: DNA repair protein RAD51 homolog 1-like [Cicer arietinum] gi|502150634|ref|XP_004508049.1| chr4 30677808 30680379 -
2 domain predictions
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Lj4g3v2226770.1
n.a. PREDICTED: ABC transporter B family member 11-like [Glycine max] gi|356565525|ref|XP_003550990.1| chr4 30876643 30878010 -
2 domain predictions
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Lj4g3v2227820.1
n.a. ABC transporter B family member [Medicago truncatula] gi|357479199|ref|XP_003609885.1| chr4 30889551 30892439 -
2 domain predictions
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Lj4g3v2227830.1
n.a. ABC transporter B family member [Medicago truncatula] gi|357479199|ref|XP_003609885.1| chr4 30892388 30894392 -
2 domain predictions
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Lj4g3v2227930.1
n.a. PREDICTED: ABC transporter B family member 21-like isoform X2 [Cicer arietinum] gi|502150699|ref|XP_004508080.1| chr4 30906756 30912569 -
2 domain predictions
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Lj4g3v2249150.1
n.a. PREDICTED: pleiotropic drug resistance protein 3-like [Glycine max] gi|356565445|ref|XP_003550950.1| chr4 31036661 31047626 +
2 domain predictions
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Lj4g3v2249170.1
n.a. PREDICTED: pleiotropic drug resistance protein 3-like [Glycine max] gi|356564672|ref|XP_003550575.1| chr4 31050859 31060611 -
2 domain predictions
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Lj4g3v2524930.1
n.a. PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356528244|ref|XP_003532715.1| chr4 34026644 34037676 +
2 domain predictions
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Lj4g3v2742690.1
n.a. n.a. chr4 36782619 36789752 +
2 domain predictions
 –
Lj4g3v2788050.1
n.a. ABC transporter family protein [Populus trichocarpa] gi|224093878|ref|XP_002310031.1| chr4 37381016 37385532 -
2 domain predictions
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Lj4g3v2882010.1
n.a. PREDICTED: chaperone protein ClpC, chloroplastic-like isoform 1 [Glycine max] gi|356508861|ref|XP_003523172.1| chr4 38486905 38493138 +
2 domain predictions
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Lj4g3v2882010.2
n.a. PREDICTED: chaperone protein ClpC, chloroplastic-like isoform 1 [Glycine max] gi|356508861|ref|XP_003523172.1| chr4 38486905 38493138 +
2 domain predictions
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Lj4g3v2973590.1
n.a. Disease resistance protein (TIR-NBS class) [Theobroma cacao] gi|508726884|gb|EOY18781.1| chr4 39315754 39320342 +
2 domain predictions
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Lj4g3v3014200.1
n.a. PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like [Glycine max] gi|356527688|ref|XP_003532440.1| chr4 39969633 39982076 +
2 domain predictions
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Lj4g3v3015080.1
n.a. ABC transporter I family member [Medicago truncatula] gi|357520651|ref|XP_003630614.1| chr4 40331295 40335943 -
2 domain predictions
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Lj4g3v3115140.1
n.a. PREDICTED: ABC transporter G family member 16-like [Cicer arietinum] gi|502138011|ref|XP_004503258.1| chr4 42239336 42247618 +
2 domain predictions
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Lj5g3v0240200.1
n.a. PREDICTED: ABC transporter B family member 13-like [Cicer arietinum] gi|502126388|ref|XP_004499289.1| chr5 1981611 1988950 +
2 domain predictions
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Lj5g3v0540130.1
n.a. PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] gi|356563840|ref|XP_003550166.1| chr5 6488000 6497092 +
2 domain predictions
 –