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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006553
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 129 results. Now displaying 3 of 3 with 50 rows per page. This search has taken 7.643s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0271800.2
n.a. F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|A0A1J7GHQ3|A0A1J7GHQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271800 LjG1.1_chr4 63856122 63858252 +
2 domain predictions
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LotjaGi4g1v0271800.3
n.a. F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|A0A1J7GHQ3|A0A1J7GHQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271800 LjG1.1_chr4 63856354 63858252 +
2 domain predictions
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LotjaGi4g1v0280400.1
n.a. Leucine-rich repeat (LRR) family protein; TAIR: AT1G15740.1 Leucine-rich repeat family protein; Swiss-Prot: sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A151SRH6|A0A151SRH6_CAJCA F-box/LRR-repeat protein 14; Found in the gene: LotjaGi4g1v0280400 LjG1.1_chr4 65135492 65146578 +
2 domain predictions
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LotjaGi4g1v0280400.2
n.a. Leucine-rich repeat (LRR) family protein; TAIR: AT1G15740.1 Leucine-rich repeat family protein; Swiss-Prot: sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A151SRH6|A0A151SRH6_CAJCA F-box/LRR-repeat protein 14; Found in the gene: LotjaGi4g1v0280400 LjG1.1_chr4 65136509 65145098 +
2 domain predictions
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LotjaGi4g1v0289100.1
n.a. F-box family protein; TAIR: AT5G57900.1 SKP1 interacting partner 1; Swiss-Prot: sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1; TrEMBL-Plants: tr|G7JFK8|G7JFK8_MEDTR F-box SKIP1-like protein; Found in the gene: LotjaGi4g1v0289100 LjG1.1_chr4 66141908 66144779 +
2 domain predictions
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LotjaGi4g1v0289100.2
n.a. F-box family protein; TAIR: AT5G57900.1 SKP1 interacting partner 1; Swiss-Prot: sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1; TrEMBL-Plants: tr|I1JGR2|I1JGR2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0289100 LjG1.1_chr4 66142123 66143369 +
2 domain predictions
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LotjaGi4g1v0434900.1
n.a. Leucine-rich repeat (LRR) family protein; TAIR: AT4G23840.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein; TrEMBL-Plants: tr|K7KRX4|K7KRX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0434900 LjG1.1_chr4 80836367 80841766 +
2 domain predictions
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LotjaGi5g1v0030800.1
n.a. F-box protein; TAIR: AT1G47056.1 VIER F-box protein 1; Swiss-Prot: sp|Q9C626|FB37_ARATH F-box protein At1g47056; TrEMBL-Plants: tr|Q2HTR2|Q2HTR2_MEDTR Cyclin-like F-box; Found in the gene: LotjaGi5g1v0030800 LjG1.1_chr5 4928181 4929827 -
2 domain predictions
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LotjaGi5g1v0045900.1
n.a. F-box / LRR-repeat protein; TAIR: AT4G33210.1 F-box family protein; Swiss-Prot: sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15; TrEMBL-Plants: tr|I1M955|I1M955_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0045900 LjG1.1_chr5 7727043 7738328 -
2 domain predictions
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LotjaGi5g1v0045900.2
n.a. F-box / LRR-repeat protein; TAIR: AT4G33210.1 F-box family protein; Swiss-Prot: sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15; TrEMBL-Plants: tr|I1M955|I1M955_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0045900 LjG1.1_chr5 7727935 7737599 -
2 domain predictions
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LotjaGi5g1v0060200.1
n.a. F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|A0A151SCH7|A0A151SCH7_CAJCA EIN3-binding F-box protein 1; Found in the gene: LotjaGi5g1v0060200 LjG1.1_chr5 10118475 10122865 -
2 domain predictions
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LotjaGi5g1v0060200.2
n.a. F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|G7I706|G7I706_MEDTR EIN3-binding F-box-like protein; Found in the gene: LotjaGi5g1v0060200 LjG1.1_chr5 10119868 10121802 -
2 domain predictions
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LotjaGi5g1v0115500.1
n.a. F-box protein; TAIR: AT3G58530.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8LB33|FB330_ARATH F-box protein At3g58530; TrEMBL-Plants: tr|I3SB53|I3SB53_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0115500 LjG1.1_chr5 23564438 23577038 +
2 domain predictions
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LotjaGi5g1v0262400.1
n.a. Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1; TrEMBL-Plants: tr|A0A072VML5|A0A072VML5_MEDTR Transport inhibitor response-like protein; Found in the gene: LotjaGi5g1v0262400 LjG1.1_chr5 57124771 57128873 -
2 domain predictions
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LotjaGi5g1v0351700.1
n.a. F-box/LRR protein; TAIR: AT2G17020.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10; TrEMBL-Plants: tr|A0A1J7HJC3|A0A1J7HJC3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351700 LjG1.1_chr5 66763447 66768750 -
2 domain predictions
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LotjaGi5g1v0351700.2
n.a. F-box/LRR protein; TAIR: AT2G17020.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10; TrEMBL-Plants: tr|A0A1J7HJC3|A0A1J7HJC3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351700 LjG1.1_chr5 66764444 66767367 -
2 domain predictions
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LotjaGi5g1v0353400.1
n.a. F-box/LRR-repeat protein, putative; TAIR: AT5G23340.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|I3SW78|I3SW78_MEDTR F-box/LRR protein; Found in the gene: LotjaGi5g1v0353400 LjG1.1_chr5 66912971 66915468 +
2 domain predictions
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LotjaGi6g1v0057900.2
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A1J7GM44|A0A1J7GM44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0057900 LjG1.1_chr6 10581985 10585559 +
2 domain predictions
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LotjaGi6g1v0057900.3
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A1J7GM44|A0A1J7GM44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0057900 LjG1.1_chr6 10582068 10585278 +
2 domain predictions
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LotjaGi6g1v0058000.1
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UYK8|A0A072UYK8_MEDTR F-box/LRR protein; Found in the gene: LotjaGi6g1v0058000 LjG1.1_chr6 10624310 10627591 +
2 domain predictions
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LotjaGi6g1v0058300_LC.1
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|I1M1I2|I1M1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0058300_LC LjG1.1_chr6 10633139 10634472 +
2 domain predictions
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LotjaGi6g1v0058300_LC.2
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|I1M1I2|I1M1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0058300_LC LjG1.1_chr6 10633530 10634410 +
2 domain predictions
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LotjaGi6g1v0070300.1
n.a. Coronatine-insensitive 1; TAIR: AT2G39940.1 RNI-like superfamily protein; Swiss-Prot: sp|O04197|COI1_ARATH Coronatine-insensitive protein 1; TrEMBL-Plants: tr|Q45FY8|Q45FY8_SOYBN Coronatine-insensitive 1; Found in the gene: LotjaGi6g1v0070300 LjG1.1_chr6 13376824 13380627 -
2 domain predictions
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LotjaGi6g1v0203600.1
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A0D2NIS0|A0A0D2NIS0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi6g1v0203600 LjG1.1_chr6 50102581 50105062 -
2 domain predictions
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LotjaGi6g1v0225200.1
n.a. F-box/LRR-repeat protein, putative; TAIR: AT2G06040.1 F-box/LRR protein; Swiss-Prot: sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13; TrEMBL-Plants: tr|A0A072V6W0|A0A072V6W0_MEDTR Rad7, putative; Found in the gene: LotjaGi6g1v0225200 LjG1.1_chr6 53011545 53019369 -
2 domain predictions
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LotjaGi6g1v0302100.1
n.a. F-box/LRR-repeat protein; TAIR: AT4G15475.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A0S3S3G5|A0A0S3S3G5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0302100 LjG1.1_chr6 61939313 61945890 +
2 domain predictions
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LotjaGi6g1v0302100.2
n.a. F-box/LRR-repeat protein; TAIR: AT4G15475.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A0S3S3G5|A0A0S3S3G5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0302100 LjG1.1_chr6 61939641 61945134 +
2 domain predictions
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LotjaGi6g1v0302100.3
n.a. F-box/LRR-repeat protein; TAIR: AT4G15475.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|G7IFP9|G7IFP9_MEDTR F-box/LRR protein; Found in the gene: LotjaGi6g1v0302100 LjG1.1_chr6 61939641 61945134 +
2 domain predictions
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LotjaGi6g1v0311900.1
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|I1M1I2|I1M1I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311900 LjG1.1_chr6 63046969 63050324 -
2 domain predictions
 –