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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011333
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 314 results. Now displaying 3 of 7 with 50 rows per page. This search has taken 5.929s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v2366270.2
n.a. PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| chr4 32526892 32529650 +
2 domain predictions
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Lj5g3v0186670.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr5 1631327 1632127 -
2 domain predictions
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Lj5g3v0186680.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr5 1631510 1632064 -
2 domain predictions
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Lj5g3v0279120.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g30600-like [Glycine max] gi|356553317|ref|XP_003545003.1| chr5 2299980 2308182 -
2 domain predictions
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Lj5g3v0279120.2
n.a. Kelch-like protein [Medicago truncatula] gi|357490099|ref|XP_003615337.1| chr5 2299980 2308182 -
2 domain predictions
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Lj5g3v0496900.1
n.a. PREDICTED: BTB/POZ domain-containing protein NPY1-like [Cicer arietinum] gi|502125127|ref|XP_004498809.1| chr5 4917926 4924852 -
2 domain predictions
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Lj5g3v0496900.2
n.a. PREDICTED: BTB/POZ domain-containing protein NPY1-like [Glycine max] gi|356564003|ref|XP_003550246.1| chr5 4919513 4924852 -
2 domain predictions
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Lj5g3v0962400.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Glycine max] gi|356500220|ref|XP_003518931.1| chr5 14561733 14565553 +
2 domain predictions
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Lj5g3v1003910.1
n.a. PREDICTED: ETO1-like protein 1-like [Glycine max] gi|356500164|ref|XP_003518903.1| chr5 15981419 15986372 +
2 domain predictions
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Lj5g3v1473500.2
n.a. PREDICTED: root phototropism protein 3-like [Glycine max] gi|356574935|ref|XP_003555598.1| chr5 21606833 21607654 +
2 domain predictions
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Lj5g3v1665200.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g03010-like [Glycine max] gi|356500276|ref|XP_003518959.1| chr5 23771332 23776189 +
2 domain predictions
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Lj5g3v1665210.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g03010-like [Glycine max] gi|356500276|ref|XP_003518959.1| chr5 23773154 23776629 +
2 domain predictions
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Lj5g3v1811610.1
n.a. Root phototropism protein [Medicago truncatula] gi|357443211|ref|XP_003591883.1| chr5 25911888 25915378 -
2 domain predictions
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Lj5g3v2057450.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isoform X1 [Cicer arietinum] gi|502119853|ref|XP_004496757.1| chr5 29662923 29671577 +
2 domain predictions
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Lj5g3v2099740.1
n.a. PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] gi|356536111|ref|XP_003536583.1| chr5 30115193 30121125 +
2 domain predictions
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Lj5g3v2242520.1
n.a. PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|225428047|ref|XP_002279232.1| chr5 32479390 32479977 +
2 domain predictions
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Lj5g3v2243530.1
n.a. PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|225428047|ref|XP_002279232.1| chr5 32484469 32485062 +
2 domain predictions
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Lj6g3v0528520.1
n.a. transposase [Populus tomentosa] gi|429326652|gb|AFZ78666.1| chr6 5508311 5513375 -
2 domain predictions
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Lj6g3v1692500.1
n.a. NPR1-1 protein [Glycine max] gi|351726319|ref|NP_001238658.1| chr6 18835132 18841561 +
2 domain predictions
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Lj6g3v1707360.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g47800-like [Glycine max] gi|356532859|ref|XP_003534987.1| chr6 19315886 19320202 -
2 domain predictions
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Lj6g3v1949700.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Cicer arietinum] gi|502078548|ref|XP_004485981.1| chr6 22343633 22345771 -
2 domain predictions
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Lj6g3v1949700.2
n.a. BTB/POZ domain-containing protein [Medicago truncatula] gi|357447197|ref|XP_003593874.1| chr6 22343633 22346335 -
2 domain predictions
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Lj6g3v2193620.1
n.a. n.a. chr6 25421855 25425521 +
2 domain predictions
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Lj6g3v2193630.1
n.a. PREDICTED: root phototropism protein 3-like [Glycine max] gi|356554757|ref|XP_003545709.1| chr6 25422037 25425815 -
2 domain predictions
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LotjaGi1g1v0008000.1
n.a. BTB/POZ domain-containing protein; TAIR: AT5G48130.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LUB9|Y5813_ARATH BTB/POZ domain-containing protein At5g48130; TrEMBL-Plants: tr|A0A0B2SQ01|A0A0B2SQ01_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0008000 LjG1.1_chr1 1058630 1062342 -
2 domain predictions
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LotjaGi1g1v0011800.1
n.a. BTB/POZ domain-containing protein; TAIR: AT1G55760.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q680K8|Y1576_ARATH BTB/POZ domain-containing protein At1g55760; TrEMBL-Plants: tr|A0A151U2K6|A0A151U2K6_CAJCA Protein maternal effect lethal 26; Found in the gene: LotjaGi1g1v0011800 LjG1.1_chr1 1458941 1461500 -
2 domain predictions
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LotjaGi1g1v0045800.1
n.a. Regulatory protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q0JJ01|NPR2_ORYSJ BTB/POZ domain and ankyrin repeat-containing protein NPR2; TrEMBL-Plants: tr|I1M705|I1M705_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0045800 LjG1.1_chr1 6271139 6280773 -
2 domain predictions
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LotjaGi1g1v0046100_LC.1
n.a. BTB/POZ domain and ankyrin repeat-containing protein NPR1; TAIR: AT5G45110.1 NPR1-like protein 3; Swiss-Prot: sp|Q8L746|NPR3_ARATH Regulatory protein NPR3; TrEMBL-Plants: tr|I1JJ13|I1JJ13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0046100_LC LjG1.1_chr1 6316459 6318160 -
2 domain predictions
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LotjaGi1g1v0048300_LC.1
n.a. LOB domain family protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|I3SSE0|I3SSE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0048300_LC LjG1.1_chr1 6614623 6618154 -
2 domain predictions
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LotjaGi1g1v0059200.1
n.a. BTB-POZ and MATH domain protein; TAIR: AT3G03740.1 BTB-POZ and MATH domain 4; Swiss-Prot: sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4; TrEMBL-Plants: tr|K7KB30|K7KB30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059200 LjG1.1_chr1 8289166 8294132 -
2 domain predictions
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LotjaGi1g1v0104800.1
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT2G30520.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q682S0|RPT2_ARATH Root phototropism protein 2; TrEMBL-Plants: tr|G7K0V9|G7K0V9_MEDTR Root phototropism-like protein; Found in the gene: LotjaGi1g1v0104800 LjG1.1_chr1 16187382 16191953 +
2 domain predictions
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LotjaGi1g1v0104800.2
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT2G30520.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q682S0|RPT2_ARATH Root phototropism protein 2; TrEMBL-Plants: tr|G7K0V9|G7K0V9_MEDTR Root phototropism-like protein; Found in the gene: LotjaGi1g1v0104800 LjG1.1_chr1 16189332 16191897 +
2 domain predictions
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LotjaGi1g1v0116500.1
n.a. Ethylene-overproduction protein 1; TAIR: AT3G51770.2 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1; TrEMBL-Plants: tr|A0A151RT50|A0A151RT50_CAJCA Ethylene-overproduction protein 1; Found in the gene: LotjaGi1g1v0116500 LjG1.1_chr1 18331879 18337115 -
2 domain predictions
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LotjaGi1g1v0158600.1
n.a. BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|I3T1G3|I3T1G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0158600 LjG1.1_chr1 29403874 29407465 +
2 domain predictions
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LotjaGi1g1v0158600.2
n.a. BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|I3T1G3|I3T1G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0158600 LjG1.1_chr1 29403874 29407465 +
2 domain predictions
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LotjaGi1g1v0158600.3
n.a. BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|I3T1G3|I3T1G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0158600 LjG1.1_chr1 29404316 29407220 +
2 domain predictions
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LotjaGi1g1v0256900.1
n.a. BTB/POZ domain-containing protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|A0A0B2S5U1|A0A0B2S5U1_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0256900 LjG1.1_chr1 62200269 62204060 +
2 domain predictions
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LotjaGi1g1v0256900.2
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|A0A0B2S5U1|A0A0B2S5U1_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0256900 LjG1.1_chr1 62201190 62203902 +
2 domain predictions
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LotjaGi1g1v0256900.3
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|K7MTW7|K7MTW7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0256900 LjG1.1_chr1 62201825 62204022 +
2 domain predictions
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LotjaGi1g1v0263200.1
n.a. BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|A0A151TSF1|A0A151TSF1_CAJCA TD and POZ domain-containing protein 2; Found in the gene: LotjaGi1g1v0263200 LjG1.1_chr1 64479055 64482242 +
2 domain predictions
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LotjaGi1g1v0263200.2
n.a. BTB/POZ domain-containing protein; TAIR: AT1G21780.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780; TrEMBL-Plants: tr|I1KAC4|I1KAC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0263200 LjG1.1_chr1 64479064 64504718 +
2 domain predictions
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LotjaGi1g1v0268000.1
n.a. BTB/POZ domain-containing protein; TAIR: AT4G08455.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q6DBN1|Y4845_ARATH BTB/POZ domain-containing protein At4g08455; TrEMBL-Plants: tr|I3T836|I3T836_MEDTR Broad-complex, tramtrack and bric A brac protein; Found in the gene: LotjaGi1g1v0268000 LjG1.1_chr1 65423641 65431645 -
2 domain predictions
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LotjaGi1g1v0311300.1
n.a. Arm repeat protein interacting with abf2; TAIR: AT5G19330.1 ARM repeat protein interacting with ABF2; Swiss-Prot: sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2; TrEMBL-Plants: tr|A0A068U5R7|A0A068U5R7_COFCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0311300 LjG1.1_chr1 75518364 75522768 -
2 domain predictions
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LotjaGi1g1v0444600.1
n.a. Ethylene-overproduction protein 1; TAIR: AT3G51770.2 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1; TrEMBL-Plants: tr|A0A0L9U459|A0A0L9U459_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0444600 LjG1.1_chr1 94225414 94232118 +
2 domain predictions
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LotjaGi1g1v0444600.2
n.a. Ethylene-overproduction protein 1; TAIR: AT3G51770.2 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1; TrEMBL-Plants: tr|A0A0L9U459|A0A0L9U459_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0444600 LjG1.1_chr1 94225425 94231971 +
2 domain predictions
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LotjaGi1g1v0459200.1
n.a. BTB/POZ domain-containing protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|A0A0B2S5U1|A0A0B2S5U1_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0459200 LjG1.1_chr1 96264301 96268037 -
2 domain predictions
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LotjaGi1g1v0459200.2
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|A0A0B2S5U1|A0A0B2S5U1_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0459200 LjG1.1_chr1 96264582 96267187 -
2 domain predictions
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LotjaGi1g1v0459200.3
n.a. Phototropic-responsive NPH3 family protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|A0A0B2S5U1|A0A0B2S5U1_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0459200 LjG1.1_chr1 96264582 96267413 -
2 domain predictions
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LotjaGi1g1v0477300.1
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1L6J4|I1L6J4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0477300 LjG1.1_chr1 98902647 98913562 -
2 domain predictions
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LotjaGi1g1v0647800.1
n.a. BTB-POZ and MATH domain protein; TAIR: AT3G03740.1 BTB-POZ and MATH domain 4; Swiss-Prot: sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4; TrEMBL-Plants: tr|I1N8D1|I1N8D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0647800 LjG1.1_chr1 120544406 120552141 +
2 domain predictions
 –