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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017451
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 414 results. Now displaying 5 of 9 with 50 rows per page. This search has taken 5.597s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0036900.1
n.a. F-box protein; TAIR: AT3G07870.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SFC7|FB135_ARATH F-box protein At3g07870; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036900 LjG1.1_chr1 5176051 5179083 -
2 domain predictions
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LotjaGi1g1v0037000.1
n.a. F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037000 LjG1.1_chr1 5182179 5184907 -
2 domain predictions
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LotjaGi1g1v0037000.2
n.a. F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037000 LjG1.1_chr1 5182253 5184707 -
2 domain predictions
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LotjaGi1g1v0037100.1
n.a. F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037100 LjG1.1_chr1 5188687 5192709 -
2 domain predictions
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LotjaGi1g1v0037600_LC.1
n.a. F-box protein; TAIR: AT3G07870.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SFC7|FB135_ARATH F-box protein At3g07870; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037600_LC LjG1.1_chr1 5263069 5263591 -
2 domain predictions
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LotjaGi1g1v0037700.1
n.a. F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037700 LjG1.1_chr1 5265397 5272355 -
2 domain predictions
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LotjaGi1g1v0047500_LC.1
n.a. F-box protein interaction domain protein; TAIR: AT1G32600.1 F-box associated ubiquitination effector family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A1J7GD53|A0A1J7GD53_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0047500_LC LjG1.1_chr1 6448293 6450552 -
2 domain predictions
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LotjaGi1g1v0145700_LC.1
n.a. F-box family protein, putative; TAIR: AT5G07610.1 F-box family protein; Swiss-Prot: sp|Q9FLS0|FB253_ARATH F-box protein At5g07610; TrEMBL-Plants: tr|A0A0D2T4E3|A0A0D2T4E3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi1g1v0145700_LC LjG1.1_chr1 24686028 24687221 +
2 domain predictions
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LotjaGi1g1v0152800.1
n.a. F-box protein family; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0152800 LjG1.1_chr1 26552386 26561192 -
2 domain predictions
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LotjaGi1g1v0152800.2
n.a. F-box protein family; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0152800 LjG1.1_chr1 26552901 26561204 -
2 domain predictions
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LotjaGi1g1v0152900.1
n.a. F-box protein interaction domain protein; TAIR: AT3G16880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIB4|FBK57_ARATH Putative F-box/kelch-repeat protein At3g16880; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0152900 LjG1.1_chr1 26590491 26591725 +
2 domain predictions
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LotjaGi1g1v0153000.1
n.a. F-box protein, putative; TAIR: AT3G22650.2 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0153000 LjG1.1_chr1 26612257 26619648 +
2 domain predictions
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LotjaGi1g1v0153000.2
n.a. F-box protein, putative; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0153000 LjG1.1_chr1 26612257 26619648 +
2 domain predictions
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LotjaGi1g1v0153000.3
n.a. F-box protein, putative; TAIR: AT3G22650.2 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0153000 LjG1.1_chr1 26612288 26619646 +
2 domain predictions
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LotjaGi1g1v0173100.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0173100 LjG1.1_chr1 32915517 32917903 +
2 domain predictions
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LotjaGi1g1v0190000.1
n.a. F-box protein interaction domain protein; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|A0A072UT65|A0A072UT65_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0190000 LjG1.1_chr1 37270084 37274103 +
2 domain predictions
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LotjaGi1g1v0194100.1
n.a. F-box protein interaction domain protein; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|A0A1J7G5U0|A0A1J7G5U0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0194100 LjG1.1_chr1 38415550 38420120 -
2 domain predictions
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LotjaGi1g1v0205700.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205700 LjG1.1_chr1 44672179 44675101 -
2 domain predictions
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LotjaGi1g1v0267600.1
n.a. F-box protein interaction domain protein; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|G7IJV6|G7IJV6_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0267600 LjG1.1_chr1 65386190 65390407 +
2 domain predictions
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LotjaGi1g1v0286900.1
n.a. F-box protein family; TAIR: AT2G40925.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q3E7D1|FB131_ARATH F-box protein At2g40925; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0286900 LjG1.1_chr1 69694770 69700257 +
2 domain predictions
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LotjaGi1g1v0286900.2
n.a. F-box protein family; TAIR: AT2G40925.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q3E7D1|FB131_ARATH F-box protein At2g40925; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0286900 LjG1.1_chr1 69694826 69700046 +
2 domain predictions
 –
LotjaGi1g1v0294900.1
n.a. F-box protein, putative; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A072TST8|A0A072TST8_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0294900 LjG1.1_chr1 71473158 71474614 +
2 domain predictions
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LotjaGi1g1v0297700.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297700 LjG1.1_chr1 72123023 72125485 +
2 domain predictions
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LotjaGi1g1v0297700.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297700 LjG1.1_chr1 72123087 72125416 +
2 domain predictions
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LotjaGi1g1v0297800.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297800 LjG1.1_chr1 72175228 72177978 +
2 domain predictions
 –
LotjaGi1g1v0297800.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297800 LjG1.1_chr1 72175245 72178502 +
2 domain predictions
 –
LotjaGi1g1v0297900.1
n.a. F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297900 LjG1.1_chr1 72208049 72211462 +
2 domain predictions
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LotjaGi1g1v0298000.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298000 LjG1.1_chr1 72213468 72217260 +
2 domain predictions
 –
LotjaGi1g1v0298200.1
n.a. F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298200 LjG1.1_chr1 72228203 72230284 +
2 domain predictions
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LotjaGi1g1v0298300.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298300 LjG1.1_chr1 72235423 72242348 +
2 domain predictions
 –
LotjaGi1g1v0298600.1
n.a. F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7L1T9|K7L1T9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298600 LjG1.1_chr1 72256456 72259209 +
2 domain predictions
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LotjaGi1g1v0298700.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7KW05|K7KW05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298700 LjG1.1_chr1 72274705 72277772 +
2 domain predictions
 –
LotjaGi1g1v0298800.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A151STL0|A0A151STL0_CAJCA F-box/kelch-repeat protein family; Found in the gene: LotjaGi1g1v0298800 LjG1.1_chr1 72279027 72282917 +
2 domain predictions
 –
LotjaGi1g1v0299200.1
n.a. F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A0B2SLE8|A0A0B2SLE8_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0299200 LjG1.1_chr1 72374631 72380125 -
2 domain predictions
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LotjaGi1g1v0299200.2
n.a. F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A0B2SLE8|A0A0B2SLE8_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0299200 LjG1.1_chr1 72374981 72379328 -
2 domain predictions
 –
LotjaGi1g1v0304800_LC.1
n.a. F-box protein family; TAIR: AT5G07610.1 F-box family protein; Swiss-Prot: sp|Q9FLS0|FB253_ARATH F-box protein At5g07610; TrEMBL-Plants: tr|A0A1J7IEI8|A0A1J7IEI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0304800_LC LjG1.1_chr1 74359409 74360813 -
2 domain predictions
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LotjaGi1g1v0321900.1
n.a. F-box protein interaction domain protein; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|G7KLN7|G7KLN7_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0321900 LjG1.1_chr1 77336052 77338180 -
2 domain predictions
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LotjaGi1g1v0402000.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402000 LjG1.1_chr1 89047856 89051387 +
2 domain predictions
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LotjaGi1g1v0402500.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402500 LjG1.1_chr1 89079828 89083246 -
2 domain predictions
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LotjaGi1g1v0402500.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402500 LjG1.1_chr1 89080042 89083211 -
2 domain predictions
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LotjaGi1g1v0402500.3
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402500 LjG1.1_chr1 89081121 89083207 -
2 domain predictions
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LotjaGi1g1v0402700.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402700 LjG1.1_chr1 89122108 89125340 -
2 domain predictions
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LotjaGi1g1v0402800.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402800 LjG1.1_chr1 89151908 89176642 -
2 domain predictions
 –
LotjaGi1g1v0402800.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402800 LjG1.1_chr1 89173182 89201867 -
2 domain predictions
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LotjaGi1g1v0402800.3
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402800 LjG1.1_chr1 89173375 89176610 -
2 domain predictions
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LotjaGi1g1v0402800.4
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402800 LjG1.1_chr1 89198463 89201943 -
2 domain predictions
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LotjaGi1g1v0403400.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0403400 LjG1.1_chr1 89240557 89247679 +
2 domain predictions
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LotjaGi1g1v0403400.3
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0403400 LjG1.1_chr1 89240585 89247756 +
2 domain predictions
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LotjaGi1g1v0407200.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0407200 LjG1.1_chr1 89677160 89680142 -
2 domain predictions
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LotjaGi1g1v0407200.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0407200 LjG1.1_chr1 89677172 89679854 -
2 domain predictions
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