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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017907
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We have found 245 results. Now displaying 5 of 5 with 50 rows per page. This search has taken 6.846s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0362600.2
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q14527|HLTF_HUMAN Helicase-like transcription factor; TrEMBL-Plants: tr|A0A151U8S4|A0A151U8S4_CAJCA RING finger protein 141; Found in the gene: LotjaGi4g1v0362600 LjG1.1_chr4 74149456 74150929 -
2 domain predictions
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LotjaGi4g1v0436600.2
n.a. RING/U-box protein; TAIR: AT4G10930.1 RING/U-box protein; Swiss-Prot: sp|Q8L7I1|Y4193_ARATH Uncharacterized protein At4g10930; TrEMBL-Plants: tr|K7L4K2|K7L4K2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436600 LjG1.1_chr4 80958065 80968235 +
2 domain predictions
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LotjaGi5g1v0019300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G19310.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3S3J9|I3S3J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0019300 LjG1.1_chr5 3698868 3701853 +
2 domain predictions
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LotjaGi5g1v0019300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G19310.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3S3J9|I3S3J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0019300 LjG1.1_chr5 3699845 3700537 +
2 domain predictions
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LotjaGi5g1v0046000.1
n.a. RING/U-box superfamily protein; TAIR: AT2G26350.1 peroxin 10; Swiss-Prot: sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10; TrEMBL-Plants: tr|K7MNE6|K7MNE6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0046000 LjG1.1_chr5 7751711 7761982 -
2 domain predictions
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LotjaGi5g1v0191500.1
n.a. E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|A0A151U5T5|A0A151U5T5_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi5g1v0191500 LjG1.1_chr5 48456450 48462379 -
2 domain predictions
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LotjaGi5g1v0212200.1
n.a. E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|K7N522|K7N522_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0212200 LjG1.1_chr5 51700518 51706022 -
2 domain predictions
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LotjaGi5g1v0219900.4
n.a. RING finger protein; TAIR: AT3G05250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors; TrEMBL-Plants: tr|A0A151U530|A0A151U530_CAJCA E3 ubiquitin-protein ligase Topor; Found in the gene: LotjaGi5g1v0219900 LjG1.1_chr5 52637309 52639854 +
2 domain predictions
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LotjaGi5g1v0228100_LC.1
n.a. Ring PHD family protein; TAIR: AT3G05670.1 RING/U-box protein; Swiss-Prot: sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7GZV4|A0A1J7GZV4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0228100_LC LjG1.1_chr5 53535761 53539538 +
2 domain predictions
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LotjaGi5g1v0228100_LC.3
n.a. Ring PHD family protein; TAIR: AT3G05670.1 RING/U-box protein; Swiss-Prot: sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7GZV4|A0A1J7GZV4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0228100_LC LjG1.1_chr5 53535775 53539808 +
2 domain predictions
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LotjaGi5g1v0251200.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|I1JQL7|I1JQL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 LjG1.1_chr5 55951177 55954770 +
2 domain predictions
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LotjaGi5g1v0251200.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 LjG1.1_chr5 55951498 55953626 +
2 domain predictions
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LotjaGi5g1v0303400.1
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 LjG1.1_chr5 62131803 62136846 -
2 domain predictions
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LotjaGi5g1v0303400.2
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 LjG1.1_chr5 62132686 62135089 -
2 domain predictions
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LotjaGi5g1v0303400.3
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 LjG1.1_chr5 62132686 62135575 -
2 domain predictions
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LotjaGi5g1v0303400.4
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|I1LDT7|I1LDT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0303400 LjG1.1_chr5 62132686 62136585 -
2 domain predictions
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LotjaGi5g1v0303400.5
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 LjG1.1_chr5 62132686 62136585 -
2 domain predictions
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LotjaGi5g1v0303400.6
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 LjG1.1_chr5 62132686 62136585 -
2 domain predictions
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LotjaGi5g1v0354400.1
n.a. SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|A0A1J7GA61|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400 LjG1.1_chr5 67002104 67011400 -
2 domain predictions
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LotjaGi5g1v0354400.2
n.a. SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|A0A1J7GA61|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400 LjG1.1_chr5 67002530 67010790 -
2 domain predictions
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LotjaGi5g1v0354400.3
n.a. SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|K7N2N9|K7N2N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400 LjG1.1_chr5 67002542 67011247 -
2 domain predictions
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LotjaGi5g1v0357200.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi5g1v0357200 LjG1.1_chr5 67173148 67179273 +
2 domain predictions
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LotjaGi5g1v0357200.2
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A0B2RGE0|A0A0B2RGE0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0357200 LjG1.1_chr5 67174282 67178940 +
2 domain predictions
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LotjaGi6g1v0002600.1
n.a. RING/U-box superfamily protein, putative; TAIR: AT3G07200.1 RING/U-box superfamily protein; Swiss-Prot: sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21; TrEMBL-Plants: tr|C6T066|C6T066_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0002600 LjG1.1_chr6 623807 627909 +
2 domain predictions
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LotjaGi6g1v0006600.1
n.a. DNA/RNA helicase protein; TAIR: AT5G43530.1 Helicase protein with RING/U-box domain-containing protein; Swiss-Prot: sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; TrEMBL-Plants: tr|A0A072VHP2|A0A072VHP2_MEDTR DNA repair helicase rad5,16, putative; Found in the gene: LotjaGi6g1v0006600 LjG1.1_chr6 1284453 1290535 +
2 domain predictions
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LotjaGi6g1v0090600.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi6g1v0090600 LjG1.1_chr6 19489593 19496819 -
2 domain predictions
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LotjaGi6g1v0098400.1
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99MB7|RN141_MOUSE RING finger protein 141; TrEMBL-Plants: tr|A0A0S3S149|A0A0S3S149_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0098400 LjG1.1_chr6 21306515 21309186 -
2 domain predictions
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LotjaGi6g1v0098400.2
n.a. RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99MB7|RN141_MOUSE RING finger protein 141; TrEMBL-Plants: tr|A0A0S3S149|A0A0S3S149_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0098400 LjG1.1_chr6 21306601 21309206 -
2 domain predictions
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LotjaGi6g1v0114800.1
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|I3S9T5|I3S9T5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0114800 LjG1.1_chr6 27442387 27455699 +
2 domain predictions
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LotjaGi6g1v0114800.2
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|A0A151U9W5|A0A151U9W5_CAJCA RING finger protein 141; Found in the gene: LotjaGi6g1v0114800 LjG1.1_chr6 27443246 27444893 +
2 domain predictions
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LotjaGi6g1v0131700.1
n.a. RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9P3U4|HEL1_SCHPO E3 ubiquitin-protein ligase dbl4; TrEMBL-Plants: tr|A0A072V7L1|A0A072V7L1_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0131700 LjG1.1_chr6 37900015 37902472 -
2 domain predictions
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LotjaGi6g1v0132000.1
n.a. RING/U-box superfamily protein; TAIR: AT3G14250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217; TrEMBL-Plants: tr|A0A072TPS6|A0A072TPS6_MEDTR E3 ubiquitin-protein ligase RNF144A-like protein, putative; Found in the gene: LotjaGi6g1v0132000 LjG1.1_chr6 37957823 37960565 -
2 domain predictions
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LotjaGi6g1v0133500.1
n.a. RING/U-box superfamily protein; TAIR: AT3G14250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217; TrEMBL-Plants: tr|A0A151UAA9|A0A151UAA9_CAJCA Putative E3 ubiquitin-protein ligase RNF217; Found in the gene: LotjaGi6g1v0133500 LjG1.1_chr6 38562200 38566766 -
2 domain predictions
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LotjaGi6g1v0180600.1
n.a. RING/U-box superfamily protein; TAIR: AT5G19430.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99590|SCAFB_HUMAN Protein SCAF11; TrEMBL-Plants: tr|I3SBA7|I3SBA7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0180600 LjG1.1_chr6 47223268 47229738 -
2 domain predictions
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LotjaGi6g1v0220400.1
n.a. RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|K7MC82|K7MC82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0220400 LjG1.1_chr6 52402696 52405617 -
2 domain predictions
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LotjaGi6g1v0220400.2
n.a. RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A072VHQ2|A0A072VHQ2_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0220400 LjG1.1_chr6 52402911 52405502 -
2 domain predictions
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LotjaGi6g1v0276200.1
n.a. RING/U-box superfamily protein; TAIR: AT4G19670.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9; TrEMBL-Plants: tr|I1L0B2|I1L0B2_SOYBN Reverse transcriptase-like domain-containing RBR protein; Found in the gene: LotjaGi6g1v0276200 LjG1.1_chr6 59299487 59305156 +
2 domain predictions
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LotjaGi6g1v0312100_LC.1
n.a. breast cancer associated RING 1; TAIR: AT4G21070.1 breast cancer susceptibility1; Swiss-Prot: sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; TrEMBL-Plants: tr|V7BPN4|V7BPN4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0312100_LC LjG1.1_chr6 63054122 63059920 -
2 domain predictions
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LotjaGi6g1v0332300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3RZR2|I3RZR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0332300 LjG1.1_chr6 64728113 64731329 +
2 domain predictions
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LotjaGi6g1v0333500.1
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 LjG1.1_chr6 64823053 64827826 -
2 domain predictions
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LotjaGi6g1v0333500.2
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 LjG1.1_chr6 64824024 64826251 -
2 domain predictions
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LotjaGi6g1v0333500.3
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 LjG1.1_chr6 64824024 64826370 -
2 domain predictions
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LotjaGi6g1v0333500.4
n.a. RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 LjG1.1_chr6 64825489 64826072 -
2 domain predictions
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LotjaGi6g1v0336200.1
n.a. SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT1G61140.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|K7MA23|K7MA23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0336200 LjG1.1_chr6 65062610 65072624 -
2 domain predictions
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LotjaGi6g1v0341700.1
n.a. Nitric oxide synthase-interacting protein homolog; TAIR: AT1G61620.1 phosphoinositide binding protein; Swiss-Prot: sp|Q6NUH3|NOSIP_XENLA Nitric oxide synthase-interacting protein; TrEMBL-Plants: tr|I3SS86|I3SS86_LOTJA Nitric oxide synthase-interacting protein homolog; Found in the gene: LotjaGi6g1v0341700 LjG1.1_chr6 65519499 65522075 -
2 domain predictions
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