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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019734
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 350 results. Now displaying 2 of 7 with 50 rows per page. This search has taken 6.190s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3580610.1
n.a. PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max] gi|356527318|ref|XP_003532258.1| chr1 41122727 41129885 +
4 domain predictions
1 GO term
Lj1g3v4081900.2
n.a. PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max] gi|356503354|ref|XP_003520475.1| chr1 48229997 48234776 -
3 domain predictions
1 GO term
Lj1g3v4226850.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357509627|ref|XP_003625102.1| chr1 49909961 49918712 +
3 domain predictions
1 GO term
Lj1g3v4515690.1
n.a. PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max] gi|356503624|ref|XP_003520607.1| chr1 53043870 53049743 +
4 domain predictions
1 GO term
Lj1g3v4517300.1
n.a. PREDICTED: pre-mRNA-processing factor 39-like [Cicer arietinum] gi|502110201|ref|XP_004493823.1| chr1 53245212 53253927 +
2 domain predictions
1 GO term
Lj1g3v4579410.1
n.a. PREDICTED: dnaJ homolog subfamily C member 3 homolog [Glycine max] gi|356572429|ref|XP_003554371.1| chr1 54594241 54598831 +
3 domain predictions
1 GO term
Lj1g3v4863000.1
n.a. Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Theobroma cacao] gi|508703337|gb|EOX95233.1| chr1 58880952 58884068 +
2 domain predictions
1 GO term
Lj2g3v0661550.1
n.a. PREDICTED: translocon at the outer membrane of chloroplasts 64-like isoform X1 [Cicer arietinum] gi|502138058|ref|XP_004503273.1| chr2 10699445 10705324 -
3 domain predictions
1 GO term
Lj2g3v0674850.1
n.a. PREDICTED: translocon at the outer membrane of chloroplasts 64-like isoform X1 [Cicer arietinum] gi|502138058|ref|XP_004503273.1| chr2 10806748 10813566 -
3 domain predictions
1 GO term
Lj2g3v1012930.1
n.a. kinesin light chain-like protein [Phaseolus vulgaris] gi|270342119|gb|ACZ74702.1| chr2 15445691 15448162 -
4 domain predictions
1 GO term
Lj2g3v1549630.1
n.a. PREDICTED: tetratricopeptide repeat protein 7B-like isoform X1 [Cicer arietinum] gi|502162104|ref|XP_004512392.1| chr2 24355879 24363113 +
3 domain predictions
1 GO term
Lj2g3v1828800.1
n.a. PREDICTED: nuclear autoantigenic sperm protein-like isoform X1 [Cicer arietinum] gi|502161026|ref|XP_004511989.1| chr2 27596252 27600190 -
3 domain predictions
1 GO term
Lj2g3v1931920.2
n.a. PREDICTED: tetratricopeptide repeat protein 13-like [Cicer arietinum] gi|502160736|ref|XP_004511873.1| chr2 28436299 28448296 -
4 domain predictions
1 GO term
Lj2g3v2002390.1
n.a. PREDICTED: heat shock protein STI-like [Cicer arietinum] gi|502160177|ref|XP_004511659.1| chr2 30309315 30312907 +
3 domain predictions
1 GO term
Lj2g3v2002390.2
n.a. PREDICTED: heat shock protein STI-like [Glycine max] gi|356540381|ref|XP_003538668.1| chr2 30310022 30312907 +
3 domain predictions
1 GO term
Lj2g3v2061250.1
n.a. PREDICTED: protein SGT1 homolog [Cicer arietinum] gi|502159855|ref|XP_004511553.1| chr2 31129652 31133792 +
4 domain predictions
1 GO term
Lj2g3v2061250.2
n.a. PREDICTED: protein SGT1 homolog [Cicer arietinum] gi|502159855|ref|XP_004511553.1| chr2 31129652 31133792 +
4 domain predictions
1 GO term
Lj2g3v2314890.1
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356500888|ref|XP_003519262.1| chr2 33509516 33517855 +
4 domain predictions
1 GO term
Lj2g3v2314890.2
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356553104|ref|XP_003544898.1| chr2 33513341 33517855 +
4 domain predictions
1 GO term
Lj2g3v2878430.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508720006|gb|EOY11903.1| chr2 37484110 37486925 +
3 domain predictions
1 GO term
Lj3g3v0139440.2
n.a. PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit [Glycine max] gi|356550567|ref|XP_003543657.1| chr3 1029218 1046527 -
3 domain predictions
1 GO term
Lj3g3v0428420.1
n.a. PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] gi|356544082|ref|XP_003540484.1| chr3 3919561 3923259 -
3 domain predictions
1 GO term
Lj3g3v0428420.2
n.a. PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] gi|356577383|ref|XP_003556806.1| chr3 3919561 3923259 -
3 domain predictions
1 GO term
Lj3g3v0428420.3
n.a. PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] gi|356577383|ref|XP_003556806.1| chr3 3920529 3922055 -
4 domain predictions
1 GO term
Lj3g3v0477990.1
n.a. PREDICTED: protein KIAA0664 homolog [Glycine max] gi|356555293|ref|XP_003545968.1| chr3 5436608 5452495 +
3 domain predictions
1 GO term
Lj3g3v0477990.2
n.a. PREDICTED: protein KIAA0664 homolog [Glycine max] gi|356555293|ref|XP_003545968.1| chr3 5436608 5452495 +
3 domain predictions
1 GO term
Lj3g3v0718250.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cicer arietinum] gi|502155914|ref|XP_004510236.1| chr3 7777520 7782037 -
3 domain predictions
1 GO term
Lj3g3v0964210.1
n.a. PREDICTED: protein unc-45 homolog A-like isoform X2 [Cicer arietinum] gi|502088360|ref|XP_004488802.1| chr3 12512387 12514935 -
2 domain predictions
1 GO term
Lj3g3v0964210.2
n.a. PREDICTED: protein unc-45 homolog A-like isoform X1 [Cicer arietinum] gi|502088356|ref|XP_004488801.1| chr3 12512387 12514935 -
2 domain predictions
1 GO term
Lj3g3v1061300.1
n.a. PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Cicer arietinum] gi|502089840|ref|XP_004489036.1| chr3 14154310 14158131 +
4 domain predictions
1 GO term
Lj3g3v1061300.2
n.a. PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Cicer arietinum] gi|502089840|ref|XP_004489036.1| chr3 14155144 14158131 +
4 domain predictions
1 GO term
Lj3g3v1061300.3
n.a. PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Cicer arietinum] gi|502089840|ref|XP_004489036.1| chr3 14155762 14158131 +
4 domain predictions
1 GO term
Lj3g3v2184850.2
n.a. PREDICTED: protein TIF31 homolog [Glycine max] gi|356522331|ref|XP_003529800.1| chr3 27065174 27069802 -
3 domain predictions
1 GO term
Lj3g3v2247180.1
n.a. PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit-like [Glycine max] gi|356526163|ref|XP_003531689.1| chr3 27799235 27813366 -
3 domain predictions
1 GO term
Lj3g3v2441940.1
n.a. PREDICTED: clustered mitochondria protein-like [Cicer arietinum] gi|502156861|ref|XP_004510673.1| chr3 30151071 30164582 +
3 domain predictions
1 GO term
Lj3g3v2441940.2
n.a. PREDICTED: clustered mitochondria protein-like [Cicer arietinum] gi|502156861|ref|XP_004510673.1| chr3 30151071 30164582 +
3 domain predictions
1 GO term
Lj3g3v2441940.4
n.a. PREDICTED: clustered mitochondria protein-like [Cicer arietinum] gi|502156861|ref|XP_004510673.1| chr3 30151071 30164582 +
3 domain predictions
1 GO term
Lj3g3v2476580.1
n.a. PREDICTED: nephrocystin-3-like [Glycine max] gi|356560262|ref|XP_003548412.1| chr3 30392454 30395348 -
4 domain predictions
1 GO term
Lj3g3v2849010.1
n.a. PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cicer arietinum] gi|502082429|ref|XP_004487164.1| chr3 35164313 35169883 +
3 domain predictions
1 GO term
Lj3g3v2849010.2
n.a. PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cicer arietinum] gi|502082429|ref|XP_004487164.1| chr3 35164313 35169883 +
3 domain predictions
1 GO term
Lj3g3v2849010.3
n.a. PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cicer arietinum] gi|502082429|ref|XP_004487164.1| chr3 35164313 35167845 +
3 domain predictions
1 GO term
Lj3g3v2923190.2
n.a. PREDICTED: outer envelope protein 61, chloroplastic-like [Cicer arietinum] gi|502145945|ref|XP_004506250.1| chr3 36497142 36501605 +
3 domain predictions
1 GO term
Lj3g3v3579380.1
n.a. PREDICTED: platelet binding protein GspB-like [Cicer arietinum] gi|502144327|ref|XP_004505657.1| chr3 43486015 43495572 -
2 domain predictions
1 GO term
Lj3g3v3690010.1
n.a. PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max] gi|356542700|ref|XP_003539804.1| chr3 44831740 44835368 -
4 domain predictions
1 GO term
Lj4g3v0341190.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356512046|ref|XP_003524732.1| chr4 4593527 4604643 +
3 domain predictions
1 GO term
Lj4g3v1327390.1
n.a. HSP70-interacting protein 1 isoform 1 [Theobroma cacao] gi|508777201|gb|EOY24457.1| chr4 19467719 19472535 -
4 domain predictions
1 GO term
Lj4g3v1327390.2
n.a. HSP70-interacting protein 1 isoform 1 [Theobroma cacao] gi|508777201|gb|EOY24457.1| chr4 19467719 19472502 -
4 domain predictions
1 GO term
Lj4g3v1881890.1
n.a. PREDICTED: CCR4-NOT transcription complex subunit 10-like [Glycine max] gi|356562973|ref|XP_003549742.1| chr4 26730270 26737118 +
3 domain predictions
1 GO term
Lj4g3v1881890.2
n.a. PREDICTED: CCR4-NOT transcription complex subunit 10-like [Glycine max] gi|356548500|ref|XP_003542639.1| chr4 26733737 26737118 +
3 domain predictions
1 GO term
Lj4g3v2267380.1
n.a. PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1| chr4 31569536 31573870 +
4 domain predictions
1 GO term