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The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.
We have found 245 results. Now displaying 5 of 5 with 50 rows per page. This search has taken 6.079s to perform.
Transcript | Name | Description | Chr | Start | End | Strand | Domain predictions | GO predictions |
---|---|---|---|---|---|---|---|---|
n.a. | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q14527|HLTF_HUMAN Helicase-like transcription factor; TrEMBL-Plants: tr|A0A151U8S4|A0A151U8S4_CAJCA RING finger protein 141; Found in the gene: LotjaGi4g1v0362600 | LjG1.1_chr4 | 74149456 | 74150929 | - | – | ||
n.a. | RING/U-box protein; TAIR: AT4G10930.1 RING/U-box protein; Swiss-Prot: sp|Q8L7I1|Y4193_ARATH Uncharacterized protein At4g10930; TrEMBL-Plants: tr|K7L4K2|K7L4K2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436600 | LjG1.1_chr4 | 80958065 | 80968235 | + | – | ||
n.a. | E3 ubiquitin-protein ligase; TAIR: AT1G19310.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3S3J9|I3S3J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0019300 | LjG1.1_chr5 | 3698868 | 3701853 | + | – | ||
n.a. | E3 ubiquitin-protein ligase; TAIR: AT1G19310.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3S3J9|I3S3J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0019300 | LjG1.1_chr5 | 3699845 | 3700537 | + | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT2G26350.1 peroxin 10; Swiss-Prot: sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10; TrEMBL-Plants: tr|K7MNE6|K7MNE6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0046000 | LjG1.1_chr5 | 7751711 | 7761982 | - | – | ||
n.a. | E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|A0A151U5T5|A0A151U5T5_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi5g1v0191500 | LjG1.1_chr5 | 48456450 | 48462379 | - | – | ||
n.a. | E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|K7N522|K7N522_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0212200 | LjG1.1_chr5 | 51700518 | 51706022 | - | – | ||
n.a. | RING finger protein; TAIR: AT3G05250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors; TrEMBL-Plants: tr|A0A151U530|A0A151U530_CAJCA E3 ubiquitin-protein ligase Topor; Found in the gene: LotjaGi5g1v0219900 | LjG1.1_chr5 | 52637309 | 52639854 | + | – | ||
n.a. | Ring PHD family protein; TAIR: AT3G05670.1 RING/U-box protein; Swiss-Prot: sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7GZV4|A0A1J7GZV4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0228100_LC | LjG1.1_chr5 | 53535761 | 53539538 | + | – | ||
n.a. | Ring PHD family protein; TAIR: AT3G05670.1 RING/U-box protein; Swiss-Prot: sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7GZV4|A0A1J7GZV4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0228100_LC | LjG1.1_chr5 | 53535775 | 53539808 | + | – | ||
n.a. | E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|I1JQL7|I1JQL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 | LjG1.1_chr5 | 55951177 | 55954770 | + | – | ||
n.a. | E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 | LjG1.1_chr5 | 55951498 | 55953626 | + | – | ||
n.a. | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 | LjG1.1_chr5 | 62131803 | 62136846 | - | – | ||
n.a. | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 | LjG1.1_chr5 | 62132686 | 62135089 | - | – | ||
n.a. | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 | LjG1.1_chr5 | 62132686 | 62135575 | - | – | ||
n.a. | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|I1LDT7|I1LDT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0303400 | LjG1.1_chr5 | 62132686 | 62136585 | - | – | ||
n.a. | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 | LjG1.1_chr5 | 62132686 | 62136585 | - | – | ||
n.a. | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 | LjG1.1_chr5 | 62132686 | 62136585 | - | – | ||
n.a. | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|A0A1J7GA61|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400 | LjG1.1_chr5 | 67002104 | 67011400 | - | – | ||
n.a. | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|A0A1J7GA61|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400 | LjG1.1_chr5 | 67002530 | 67010790 | - | – | ||
n.a. | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|K7N2N9|K7N2N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400 | LjG1.1_chr5 | 67002542 | 67011247 | - | – | ||
n.a. | ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi5g1v0357200 | LjG1.1_chr5 | 67173148 | 67179273 | + | – | ||
n.a. | ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A0B2RGE0|A0A0B2RGE0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0357200 | LjG1.1_chr5 | 67174282 | 67178940 | + | – | ||
n.a. | RING/U-box superfamily protein, putative; TAIR: AT3G07200.1 RING/U-box superfamily protein; Swiss-Prot: sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21; TrEMBL-Plants: tr|C6T066|C6T066_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0002600 | LjG1.1_chr6 | 623807 | 627909 | + | – | ||
n.a. | DNA/RNA helicase protein; TAIR: AT5G43530.1 Helicase protein with RING/U-box domain-containing protein; Swiss-Prot: sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; TrEMBL-Plants: tr|A0A072VHP2|A0A072VHP2_MEDTR DNA repair helicase rad5,16, putative; Found in the gene: LotjaGi6g1v0006600 | LjG1.1_chr6 | 1284453 | 1290535 | + | – | ||
n.a. | ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi6g1v0090600 | LjG1.1_chr6 | 19489593 | 19496819 | - | – | ||
n.a. | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99MB7|RN141_MOUSE RING finger protein 141; TrEMBL-Plants: tr|A0A0S3S149|A0A0S3S149_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0098400 | LjG1.1_chr6 | 21306515 | 21309186 | - | – | ||
n.a. | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99MB7|RN141_MOUSE RING finger protein 141; TrEMBL-Plants: tr|A0A0S3S149|A0A0S3S149_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0098400 | LjG1.1_chr6 | 21306601 | 21309206 | - | – | ||
n.a. | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|I3S9T5|I3S9T5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0114800 | LjG1.1_chr6 | 27442387 | 27455699 | + | – | ||
n.a. | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|A0A151U9W5|A0A151U9W5_CAJCA RING finger protein 141; Found in the gene: LotjaGi6g1v0114800 | LjG1.1_chr6 | 27443246 | 27444893 | + | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9P3U4|HEL1_SCHPO E3 ubiquitin-protein ligase dbl4; TrEMBL-Plants: tr|A0A072V7L1|A0A072V7L1_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0131700 | LjG1.1_chr6 | 37900015 | 37902472 | - | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT3G14250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217; TrEMBL-Plants: tr|A0A072TPS6|A0A072TPS6_MEDTR E3 ubiquitin-protein ligase RNF144A-like protein, putative; Found in the gene: LotjaGi6g1v0132000 | LjG1.1_chr6 | 37957823 | 37960565 | - | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT3G14250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217; TrEMBL-Plants: tr|A0A151UAA9|A0A151UAA9_CAJCA Putative E3 ubiquitin-protein ligase RNF217; Found in the gene: LotjaGi6g1v0133500 | LjG1.1_chr6 | 38562200 | 38566766 | - | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT5G19430.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q99590|SCAFB_HUMAN Protein SCAF11; TrEMBL-Plants: tr|I3SBA7|I3SBA7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0180600 | LjG1.1_chr6 | 47223268 | 47229738 | - | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|K7MC82|K7MC82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0220400 | LjG1.1_chr6 | 52402696 | 52405617 | - | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A072VHQ2|A0A072VHQ2_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0220400 | LjG1.1_chr6 | 52402911 | 52405502 | - | – | ||
n.a. | RING/U-box superfamily protein; TAIR: AT4G19670.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9; TrEMBL-Plants: tr|I1L0B2|I1L0B2_SOYBN Reverse transcriptase-like domain-containing RBR protein; Found in the gene: LotjaGi6g1v0276200 | LjG1.1_chr6 | 59299487 | 59305156 | + | – | ||
n.a. | breast cancer associated RING 1; TAIR: AT4G21070.1 breast cancer susceptibility1; Swiss-Prot: sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; TrEMBL-Plants: tr|V7BPN4|V7BPN4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0312100_LC | LjG1.1_chr6 | 63054122 | 63059920 | - | – | ||
n.a. | E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3RZR2|I3RZR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0332300 | LjG1.1_chr6 | 64728113 | 64731329 | + | – | ||
n.a. | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 | LjG1.1_chr6 | 64823053 | 64827826 | - | – | ||
n.a. | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 | LjG1.1_chr6 | 64824024 | 64826251 | - | – | ||
n.a. | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 | LjG1.1_chr6 | 64824024 | 64826370 | - | – | ||
n.a. | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 | LjG1.1_chr6 | 64825489 | 64826072 | - | – | ||
n.a. | SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT1G61140.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|K7MA23|K7MA23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0336200 | LjG1.1_chr6 | 65062610 | 65072624 | - | – | ||
n.a. | Nitric oxide synthase-interacting protein homolog; TAIR: AT1G61620.1 phosphoinositide binding protein; Swiss-Prot: sp|Q6NUH3|NOSIP_XENLA Nitric oxide synthase-interacting protein; TrEMBL-Plants: tr|I3SS86|I3SS86_LOTJA Nitric oxide synthase-interacting protein homolog; Found in the gene: LotjaGi6g1v0341700 | LjG1.1_chr6 | 65519499 | 65522075 | - | – |