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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011598
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We have found 386 results. Now displaying 4 of 8 with 50 rows per page. This search has taken 5.693s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1428970.1
n.a. PREDICTED: transcription factor bHLH63-like [Glycine max] gi|356517054|ref|XP_003527205.1| chr5 21343966 21344959 +
5 domain predictions
1 GO term
Lj5g3v1452280.1
n.a. PREDICTED: transcription factor bHLH96-like [Glycine max] gi|356576765|ref|XP_003556500.1| chr5 21486457 21488162 -
6 domain predictions
1 GO term
Lj5g3v1529890.1
n.a. PREDICTED: transcription factor bHLH149-like [Cicer arietinum] gi|502116935|ref|XP_004495644.1| chr5 22192164 22193423 +
4 domain predictions
1 GO term
Lj5g3v1533330.1
n.a. PREDICTED: transcription factor PIF3-like isoform X1 [Cicer arietinum] gi|502117407|ref|XP_004495811.1| chr5 22402254 22407213 +
6 domain predictions
1 GO term
Lj5g3v1788210.1
n.a. PREDICTED: transcription factor bHLH30-like [Glycine max] gi|356495996|ref|XP_003516856.1| chr5 25359149 25362273 -
6 domain predictions
1 GO term
Lj5g3v1793440.1
n.a. PREDICTED: transcription factor bHLH111-like [Glycine max] gi|356533935|ref|XP_003535513.1| chr5 25508306 25511865 +
4 domain predictions
1 GO term
Lj5g3v1793440.2
n.a. PREDICTED: transcription factor bHLH111-like [Glycine max] gi|356533935|ref|XP_003535513.1| chr5 25508306 25511865 +
4 domain predictions
1 GO term
Lj5g3v2030790.1
n.a. PREDICTED: transcription factor bHLH36-like [Glycine max] gi|356535929|ref|XP_003536494.1| chr5 28833081 28834754 -
5 domain predictions
1 GO term
Lj5g3v2030790.2
n.a. PREDICTED: transcription factor bHLH36-like [Glycine max] gi|356535929|ref|XP_003536494.1| chr5 28833081 28834754 -
5 domain predictions
1 GO term
Lj5g3v2030810.1
n.a. Transcription factor bHLH120 [Medicago truncatula] gi|357444223|ref|XP_003592389.1| chr5 28838361 28840430 -
6 domain predictions
1 GO term
Lj5g3v2030810.2
n.a. Transcription factor bHLH120 [Medicago truncatula] gi|357444223|ref|XP_003592389.1| chr5 28838361 28840430 -
6 domain predictions
1 GO term
Lj5g3v2030840.1
n.a. PREDICTED: transcription factor bHLH126-like isoform X1 [Cicer arietinum] gi|502119497|ref|XP_004496640.1| chr5 28846231 28849102 +
5 domain predictions
1 GO term
Lj5g3v2099550.1
n.a. PREDICTED: transcription factor bHLH84-like [Glycine max] gi|356574313|ref|XP_003555293.1| chr5 30048973 30050645 -
6 domain predictions
1 GO term
Lj5g3v2112180.1
n.a. PREDICTED: transcription factor bHLH113-like isoform X1 [Cicer arietinum] gi|502120333|ref|XP_004496925.1| chr5 30298531 30300950 +
5 domain predictions
1 GO term
Lj5g3v2244610.1
n.a. PREDICTED: transcription factor ABORTED MICROSPORES-like [Glycine max] gi|356534418|ref|XP_003535752.1| chr5 32509814 32512850 +
6 domain predictions
1 GO term
Lj6g3v0435130.1
n.a. Transcription factor bHLH83 [Medicago truncatula] gi|357492173|ref|XP_003616375.1| chr6 4142337 4144261 +
6 domain predictions
1 GO term
Lj6g3v0468630.1
n.a. PREDICTED: transcription factor bHLH96-like [Glycine max] gi|356576765|ref|XP_003556500.1| chr6 4585222 4587260 -
6 domain predictions
1 GO term
Lj6g3v0496230.1
n.a. PREDICTED: transcription factor bHLH51-like [Glycine max] gi|356568194|ref|XP_003552298.1| chr6 4865456 4867091 -
6 domain predictions
1 GO term
Lj6g3v0673230.1
n.a. PREDICTED: transcription factor bHLH90-like [Glycine max] gi|356524045|ref|XP_003530643.1| chr6 6695357 6698846 +
6 domain predictions
1 GO term
Lj6g3v1078430.1
n.a. roothairless1/slippery [Lotus japonicus] gi|227345480|gb|ACP28172.1| chr6 12819541 12823619 -
6 domain predictions
1 GO term
Lj6g3v1078430.2
n.a. roothairless1/slippery [Lotus japonicus] gi|227345480|gb|ACP28172.1| chr6 12821321 12823619 -
6 domain predictions
1 GO term
Lj6g3v1239580.1
n.a. Transcription factor MYC4 [Medicago truncatula] gi|357449849|ref|XP_003595201.1| chr6 15332461 15337241 -
6 domain predictions
1 GO term
Lj6g3v1329780.1
n.a. indehiscent-like protein [Phaseolus vulgaris] gi|452030238|gb|AGF92088.1| chr6 15783868 15784356 -
6 domain predictions
1 GO term
Lj6g3v1881430.1
n.a. PREDICTED: transcription factor MUTE-like [Glycine max] gi|356546432|ref|XP_003541630.1| chr6 20785404 20787384 +
6 domain predictions
1 GO term
Lj6g3v2019730.1
n.a. Transcription factor bHLH36 [Medicago truncatula] gi|357446631|ref|XP_003593591.1| chr6 23927922 23929867 -
5 domain predictions
1 GO term
Lj6g3v2132220.1
n.a. PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH123-like [Glycine max] gi|356557631|ref|XP_003547119.1| chr6 24811606 24814887 -
4 domain predictions
1 GO term
Lj6g3v2168640.1
n.a. PREDICTED: transcription factor ILR3-like [Fragaria vesca subsp]. vesca] gi|470148197|ref|XP_004309656.1| chr6 24990529 24992082 +
6 domain predictions
1 GO term
Lj6g3v2171830.1
n.a. transcription factor bHLH25-like [Glycine max] gi|358248228|ref|NP_001239843.1| chr6 25071621 25074227 -
6 domain predictions
1 GO term
LotjaGi1g1v0076200.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT2G40200.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9XEF0|BH051_ARATH Transcription factor bHLH51; TrEMBL-Plants: tr|I3T8G7|I3T8G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0076200 LjG1.1_chr1 10972046 10974237 -
5 domain predictions
1 GO term
LotjaGi1g1v0092800.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G37800.1 RHD SIX-LIKE 1; Swiss-Prot: sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086; TrEMBL-Plants: tr|I1M867|I1M867_SOYBN BHLH transcription factor; Found in the gene: LotjaGi1g1v0092800 LjG1.1_chr1 13632517 13640652 -
5 domain predictions
1 GO term
LotjaGi1g1v0133400.1
n.a. Transcription factor bHLH; TAIR: AT5G65640.1 beta HLH protein 93; Swiss-Prot: sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93; TrEMBL-Plants: tr|I3SE48|I3SE48_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0133400 LjG1.1_chr1 21457753 21460295 -
5 domain predictions
1 GO term
LotjaGi1g1v0137700.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|A0A1J7GQ20|A0A1J7GQ20_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0137700 LjG1.1_chr1 22492192 22493893 +
5 domain predictions
1 GO term
LotjaGi1g1v0141500.1
n.a. Basic helix loop helix (BHLH) DNA-binding family protein; TAIR: AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96; TrEMBL-Plants: tr|I1MAX1|I1MAX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0141500 LjG1.1_chr1 23331834 23334644 +
5 domain predictions
1 GO term
LotjaGi1g1v0186200.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G62610.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LV17|BH079_ARATH Transcription factor bHLH79; TrEMBL-Plants: tr|I3SI98|I3SI98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0186200 LjG1.1_chr1 36420109 36426079 -
5 domain predictions
1 GO term
LotjaGi1g1v0192000_LC.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G65640.2 beta HLH protein 93; Swiss-Prot: sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93; TrEMBL-Plants: tr|I3SE48|I3SE48_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0192000_LC LjG1.1_chr1 37962294 37962806 -
3 domain predictions
1 GO term
LotjaGi1g1v0192500_LC.2
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G00050.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10; TrEMBL-Plants: tr|B9RLT3|B9RLT3_RICCO DNA binding protein, putative; Found in the gene: LotjaGi1g1v0192500_LC LjG1.1_chr1 38030169 38035484 +
5 domain predictions
1 GO term
LotjaGi1g1v0192500_LC.4
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G00050.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10; TrEMBL-Plants: tr|A0A061G4L1|A0A061G4L1_THECC DNA binding protein, putative isoform 4; Found in the gene: LotjaGi1g1v0192500_LC LjG1.1_chr1 38030169 38035514 +
5 domain predictions
1 GO term
LotjaGi1g1v0217400.1
n.a. Transcription factor; TAIR: AT3G47710.1 BANQUO 3; Swiss-Prot: sp|F4JCN9|PRE4_ARATH Transcription factor PRE4; TrEMBL-Plants: tr|I3S777|I3S777_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0217400 LjG1.1_chr1 47981037 47982274 -
3 domain predictions
1 GO term
LotjaGi1g1v0281900.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G53210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q700C7|SPCH_ARATH Transcription factor SPEECHLESS; TrEMBL-Plants: tr|I1JYV1|I1JYV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0281900 LjG1.1_chr1 68676959 68679981 -
5 domain predictions
1 GO term
LotjaGi1g1v0318000.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O81313|IND_ARATH Transcription factor IND; TrEMBL-Plants: tr|C0JP18|C0JP18_LOTJA Putative basic helix-loop-helix protein BHLH13; Found in the gene: LotjaGi1g1v0318000 LjG1.1_chr1 76577797 76579219 +
5 domain predictions
1 GO term
LotjaGi1g1v0333800.1
n.a. Transcription factor Inducer of CBF expression 1; TAIR: AT3G26744.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1; TrEMBL-Plants: tr|A0A0B2RHL5|A0A0B2RHL5_GLYSO Transcription factor ICE1; Found in the gene: LotjaGi1g1v0333800 LjG1.1_chr1 79233849 79238519 -
5 domain predictions
1 GO term
LotjaGi1g1v0334500.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G50915.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q93W88|BH137_ARATH Transcription factor bHLH137; TrEMBL-Plants: tr|V7AW58|V7AW58_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0334500 LjG1.1_chr1 79304975 79307984 +
5 domain predictions
1 GO term
LotjaGi1g1v0340900.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96; TrEMBL-Plants: tr|A0A0B2R0A5|A0A0B2R0A5_GLYSO Transcription factor bHLH96; Found in the gene: LotjaGi1g1v0340900 LjG1.1_chr1 80268602 80270752 -
5 domain predictions
1 GO term
LotjaGi1g1v0355800.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SND4|HEC2_ARATH Transcription factor HEC2; TrEMBL-Plants: tr|A0A1J7H7H2|A0A1J7H7H2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0355800 LjG1.1_chr1 82730669 82731830 -
5 domain predictions
1 GO term
LotjaGi1g1v0414500.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G65640.1 beta HLH protein 93; Swiss-Prot: sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93; TrEMBL-Plants: tr|I1K9L1|I1K9L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0414500 LjG1.1_chr1 90709400 90711810 -
5 domain predictions
1 GO term
LotjaGi1g1v0422000.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110; TrEMBL-Plants: tr|A0A1J7I8A0|A0A1J7I8A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422000 LjG1.1_chr1 91597389 91600795 -
3 domain predictions
1 GO term
LotjaGi1g1v0422000.2
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110; TrEMBL-Plants: tr|A0A1J7I8A0|A0A1J7I8A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422000 LjG1.1_chr1 91597389 91600795 -
3 domain predictions
1 GO term
LotjaGi1g1v0436800.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT2G18300.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8GY61|BH063_ARATH Transcription factor bHLH63; TrEMBL-Plants: tr|C0JP13|C0JP13_LOTJA Putative basic helix-loop-helix protein BHLH7; Found in the gene: LotjaGi1g1v0436800 LjG1.1_chr1 93168422 93171269 -
5 domain predictions
1 GO term
LotjaGi1g1v0444100.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G01305.1 transcription factor bHLH140-like protein; Swiss-Prot: sp|Q9M041|BH140_ARATH Transcription factor bHLH140; TrEMBL-Plants: tr|V7B5U7|V7B5U7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0444100 LjG1.1_chr1 94173368 94174209 -
5 domain predictions
1 GO term
LotjaGi1g1v0489800.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|A0A0B2QPQ5|A0A0B2QPQ5_GLYSO Transcription factor bHLH25; Found in the gene: LotjaGi1g1v0489800 LjG1.1_chr1 100313382 100319300 +
5 domain predictions
1 GO term