Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036390
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 378 results. Now displaying 4 of 8 with 50 rows per page. This search has taken 5.673s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. Cullin family protein; TAIR: AT1G69670.1 cullin 3B; Swiss-Prot: sp|Q9C9L0|CUL3B_ARATH Cullin-3B; TrEMBL-Plants: tr|A0A0L9VNM3|A0A0L9VNM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0258300 LjG1.1_chr2 72503486 72507644 +
n.a. Cullin, putative; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|A0A0L9VNM3|A0A0L9VNM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0258300 LjG1.1_chr2 72505144 72507171 +
n.a. Eukaryotic translation initiation factor 3 subunit M; TAIR: AT5G15610.2 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M; TrEMBL-Plants: tr|A0A072U6R5|A0A072U6R5_MEDTR Eukaryotic translation initiation factor 3 subunit M; Found in the gene: LotjaGi2g1v0267200 LjG1.1_chr2 73695236 73699738 +
n.a. Homologous-pairing protein 2 like; TAIR: AT1G13330.1 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP); Swiss-Prot: sp|Q9FX64|HOP2_ARATH Homologous-pairing protein 2 homolog; TrEMBL-Plants: tr|A0A0L9UTJ7|A0A0L9UTJ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0278700 LjG1.1_chr2 75023700 75028674 -
n.a. Cullin family protein; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|I1KXS9|I1KXS9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304900 LjG1.1_chr2 77822304 77827923 -
n.a. Cullin, putative; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|A0A1J7HV59|A0A1J7HV59_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0304900 LjG1.1_chr2 77823372 77825396 -
n.a. Heat shock transcription factor family protein; TAIR: AT1G32330.1 heat shock transcription factor A1D; Swiss-Prot: sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d; TrEMBL-Plants: tr|G7KDN6|G7KDN6_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi2g1v0335200 LjG1.1_chr2 81120590 81125013 +
n.a. Heat shock transcription factor family protein; TAIR: AT1G32330.1 heat shock transcription factor A1D; Swiss-Prot: sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d; TrEMBL-Plants: tr|G7KDN6|G7KDN6_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi2g1v0335200 LjG1.1_chr2 81120653 81124799 +
n.a. Vacuolar protein sorting-associated protein 25; TAIR: AT4G19003.1 E2F/DP family winged-helix DNA-binding domain-containing protein; Swiss-Prot: sp|Q8VZC9|VPS25_ARATH Vacuolar protein sorting-associated protein 25; TrEMBL-Plants: tr|I3SXY8|I3SXY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0338500 LjG1.1_chr2 81544807 81548080 -
n.a. 26S proteasome subunit, putative; TAIR: AT5G45620.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8RWF0|PS13A_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog A; TrEMBL-Plants: tr|A0A1J7HWA1|A0A1J7HWA1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0339600 LjG1.1_chr2 81654445 81659276 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072UMY5|A0A072UMY5_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi2g1v0342000 LjG1.1_chr2 81923338 81931098 +
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072UMY5|A0A072UMY5_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi2g1v0342000 LjG1.1_chr2 81923338 81931098 +
n.a. La-related; TAIR: AT4G35890.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94K80|LRP1C_ARATH La-related protein 1C; TrEMBL-Plants: tr|K7K470|K7K470_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0378500 LjG1.1_chr2 87547668 87553498 +
n.a. Histone H1; TAIR: AT2G18050.1 histone H1-3; Swiss-Prot: sp|P40267|H1_SOLPN Histone H1; TrEMBL-Plants: tr|I3S1P0|I3S1P0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0382800 LjG1.1_chr2 87920701 87922013 +
n.a. Heat shock transcription factor; TAIR: AT4G36990.1 heat shock factor 4; Swiss-Prot: sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24; TrEMBL-Plants: tr|Q43457|Q43457_SOYBN Heat shock transcription factor 34; Found in the gene: LotjaGi2g1v0400800 LjG1.1_chr2 89825571 89828125 -
n.a. MYB transcription factor; TAIR: AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2; TrEMBL-Plants: tr|V7CHF9|V7CHF9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410300 LjG1.1_chr2 90714484 90719715 -
n.a. MYB transcription factor; TAIR: AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2; TrEMBL-Plants: tr|V7CHF9|V7CHF9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410300 LjG1.1_chr2 90714664 90719315 -
n.a. Heat shock transcription factor; TAIR: AT4G11660.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9T0D3|HFB2B_ARATH Heat stress transcription factor B-2b; TrEMBL-Plants: tr|A0A0S3T5M2|A0A0S3T5M2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432300 LjG1.1_chr2 92921887 92926352 -
n.a. Telomere repeat-binding factor 4; TAIR: AT1G72740.2 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q6WLH4|SMH3_MAIZE Single myb histone 3; TrEMBL-Plants: tr|I1KG92|I1KG92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0028200 LjG1.1_chr3 3072170 3082477 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7IM52|G7IM52_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi3g1v0045400 LjG1.1_chr3 4841988 4851503 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7IM52|G7IM52_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi3g1v0045400 LjG1.1_chr3 4843698 4851450 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0S3R8N0|A0A0S3R8N0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0057500 LjG1.1_chr3 5968145 5975816 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A151RE93|A0A151RE93_CAJCA TMV resistance protein N; Found in the gene: LotjaGi3g1v0057700 LjG1.1_chr3 5979025 6001958 -
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LF48|G7LF48_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0090300 LjG1.1_chr3 10225887 10229468 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LF48|G7LF48_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0090400 LjG1.1_chr3 10231128 10238442 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LF48|G7LF48_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0090400 LjG1.1_chr3 10231142 10238472 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LF48|G7LF48_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0100800 LjG1.1_chr3 12505846 12511199 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7KYE4|K7KYE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0105200 LjG1.1_chr3 13059397 13067551 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7KYE4|K7KYE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0105200 LjG1.1_chr3 13059543 13067551 -
n.a. Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7KYE4|K7KYE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0105200 LjG1.1_chr3 13059543 13067551 -
n.a. 40S ribosomal protein S19; TAIR: AT5G61170.1 Ribosomal protein S19e family protein; Swiss-Prot: sp|Q9FNP8|RS193_ARATH 40S ribosomal protein S19-3; TrEMBL-Plants: tr|I3SQF0|I3SQF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0107200 LjG1.1_chr3 13230986 13233772 +
n.a. 40S ribosomal protein S19; TAIR: AT5G61170.1 Ribosomal protein S19e family protein; Swiss-Prot: sp|Q9FNP8|RS193_ARATH 40S ribosomal protein S19-3; TrEMBL-Plants: tr|I3SQF0|I3SQF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0107200 LjG1.1_chr3 13231193 13232486 +
n.a. 40S ribosomal protein S19; TAIR: AT3G02080.1 Ribosomal protein S19e family protein; Swiss-Prot: sp|Q9SGA6|RS191_ARATH 40S ribosomal protein S19-1; TrEMBL-Plants: tr|I3SQF0|I3SQF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0107200 LjG1.1_chr3 13232048 13232862 +
n.a. Sister chromatid cohesion 1 protein; TAIR: AT3G59550.1 Rad21/Rec8-like family protein; Swiss-Prot: sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3; TrEMBL-Plants: tr|A0A1J7GHV5|A0A1J7GHV5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0125000 LjG1.1_chr3 15276635 15283717 +
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748763 18757429 +
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748967 18755959 +
n.a. ATP-dependent helicase hrq1; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|G7IJ55|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748967 18756137 +
n.a. ATP-dependent RNA helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|A0A0L9UIS3|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18748997 18755959 +
n.a. U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr|G7IJ55|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500 LjG1.1_chr3 18754139 18755959 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072U1J0|A0A072U1J0_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0145500 LjG1.1_chr3 19354679 19380477 -
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072U1J0|A0A072U1J0_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0145500 LjG1.1_chr3 19357287 19380442 -
n.a. Transcription factor; TAIR: AT5G22220.2 E2F transcription factor 1; Swiss-Prot: sp|Q9FV71|E2FB_ARATH Transcription factor E2FB; TrEMBL-Plants: tr|K7LQ43|K7LQ43_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0181200 LjG1.1_chr3 25229354 25236830 -
n.a. Caffeic O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1; TrEMBL-Plants: tr|I1NCR8|I1NCR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0187000 LjG1.1_chr3 26306482 26313385 +
n.a. Caffeic O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1; TrEMBL-Plants: tr|C6TMQ9|C6TMQ9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0187000 LjG1.1_chr3 26306482 26313385 +
n.a. Caffeic O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1; TrEMBL-Plants: tr|C6TMQ9|C6TMQ9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0187000 LjG1.1_chr3 26306560 26312681 +
n.a. Caffeic O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1; TrEMBL-Plants: tr|I1NCR8|I1NCR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0187000 LjG1.1_chr3 26306595 26312889 +
n.a. Caffeic O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1; TrEMBL-Plants: tr|C6TMQ9|C6TMQ9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0187000 LjG1.1_chr3 26306595 26312889 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7L5T5|G7L5T5_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0190100 LjG1.1_chr3 27364087 27379474 -
n.a. Methionine aminopeptidase 2; TAIR: AT3G51800.3 metallopeptidase M24 family protein; Swiss-Prot: sp|M1CZC0|EBP1_SOLTU ERBB-3 BINDING PROTEIN 1; TrEMBL-Plants: tr|A0EVX1|A0EVX1_9FABA EBP1; Found in the gene: LotjaGi3g1v0194700 LjG1.1_chr3 28294998 28301896 +
n.a. Methionine aminopeptidase 2; TAIR: AT3G51800.3 metallopeptidase M24 family protein; Swiss-Prot: sp|M1CZC0|EBP1_SOLTU ERBB-3 BINDING PROTEIN 1; TrEMBL-Plants: tr|A0EVX1|A0EVX1_9FABA EBP1; Found in the gene: LotjaGi3g1v0194700 LjG1.1_chr3 28295466 28301245 +