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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 8 of 18 with 50 rows per page. This search has taken 5.572s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj6g3v0818980.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 6-like isoform 1 [Glycine max] gi|356527101|ref|XP_003532152.1| chr6 8258281 8264538 -
2 domain predictions
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Lj6g3v0927480.1
n.a. PREDICTED: AP-3 complex subunit delta-like [Cicer arietinum] gi|502163538|ref|XP_004512869.1| chr6 10097841 10101339 -
2 domain predictions
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Lj6g3v1055550.2
n.a. PREDICTED: nucleotide exchange factor SIL1-like [Glycine max] gi|356574918|ref|XP_003555590.1| chr6 12055600 12058727 +
2 domain predictions
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Lj6g3v1356520.1
n.a. PREDICTED: pumilio homolog 5-like [Cicer arietinum] gi|502085772|ref|XP_004488002.1| chr6 16100044 16107460 +
2 domain predictions
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Lj6g3v1445630.1
n.a. PREDICTED: protein FAM179B-like [Vitis vinifera] gi|359477401|ref|XP_003631973.1| chr6 17050810 17052720 -
2 domain predictions
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Lj6g3v1450720.1
n.a. PREDICTED: condensin-2 complex subunit D3-like [Glycine max] gi|356529537|ref|XP_003533347.1| chr6 17123075 17129749 +
2 domain predictions
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Lj6g3v1464020.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|334185156|ref|NP_001189833.1| chr6 17197175 17203576 -
2 domain predictions
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Lj6g3v1525950.1
n.a. PREDICTED: importin subunit alpha-1-like [Glycine max] gi|356556046|ref|XP_003546338.1| chr6 17602924 17607247 -
2 domain predictions
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Lj6g3v1585630.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ataxin-10-like [Glycine max] gi|356530187|ref|XP_003533665.1| chr6 17908795 17912023 -
2 domain predictions
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Lj6g3v1707240.1
n.a. PREDICTED: condensin-2 complex subunit D3-like [Glycine max] gi|356558165|ref|XP_003547378.1| chr6 19306412 19312948 +
2 domain predictions
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Lj6g3v1709530.1
n.a. PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like [Cicer arietinum] gi|502079741|ref|XP_004486353.1| chr6 19410145 19435745 -
2 domain predictions
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Lj6g3v1753130.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502079638|ref|XP_004486322.1| chr6 19727966 19731371 -
2 domain predictions
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Lj6g3v1753140.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502079638|ref|XP_004486322.1| chr6 19729232 19731371 -
2 domain predictions
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Lj6g3v1753260.1
n.a. Mo25 family protein [Theobroma cacao] gi|508781643|gb|EOY28899.1| chr6 19775152 19780410 -
2 domain predictions
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Lj6g3v1887750.1
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508713597|gb|EOY05494.1| chr6 20951901 20955324 +
2 domain predictions
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Lj6g3v1887760.1
n.a. n.a. chr6 20952256 20955324 -
2 domain predictions
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Lj6g3v1898130.1
n.a. PREDICTED: calcium-binding protein 39-like [Cicer arietinum] gi|502078924|ref|XP_004486097.1| chr6 21118426 21123092 -
2 domain predictions
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Lj6g3v1900300.1
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Glycine max] gi|356539704|ref|XP_003538335.1| chr6 21231953 21244857 +
2 domain predictions
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Lj6g3v1900300.2
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Glycine max] gi|356539704|ref|XP_003538335.1| chr6 21231953 21244857 +
2 domain predictions
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Lj6g3v1900300.3
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr6 21237681 21241414 +
2 domain predictions
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Lj6g3v1917170.1
n.a. PREDICTED: serine/threonine-protein kinase ULK4-like [Glycine max] gi|356555573|ref|XP_003546105.1| chr6 21687974 21694213 +
2 domain predictions
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Lj6g3v1970220.1
n.a. PREDICTED: U-box domain-containing protein 17-like isoform 1 [Glycine max] gi|356549180|ref|XP_003542975.1| chr6 22848785 22852316 -
2 domain predictions
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Lj6g3v1995780.1
n.a. PREDICTED: U-box domain-containing protein 7-like [Glycine max] gi|356555412|ref|XP_003546026.1| chr6 23132305 23135616 +
2 domain predictions
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Lj6g3v2084640.1
n.a. PREDICTED: vacuolar protein 8-like [Glycine max] gi|356549417|ref|XP_003543090.1| chr6 24601103 24603279 +
2 domain predictions
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Lj6g3v2204790.2
n.a. PREDICTED: splicing factor 3B subunit 1-like [Cicer arietinum] gi|502077251|ref|XP_004485595.1| chr6 25520096 25522667 -
2 domain predictions
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Lj6g3v2218350.1
n.a. PREDICTED: pumilio homolog 2-like [Glycine max] gi|356557551|ref|XP_003547079.1| chr6 25765335 25770732 +
2 domain predictions
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Lj6g3v2274460.1
n.a. PREDICTED: probable importin subunit beta-4-like [Glycine max] gi|356558485|ref|XP_003547537.1| chr6 26460405 26467503 -
2 domain predictions
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LotjaGi1g1v0011000.1
n.a. Importin subunit alpha; TAIR: AT1G51350.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q05AL1|ARMC8_DANRE Armadillo repeat-containing protein 8; TrEMBL-Plants: tr|G7K4V1|G7K4V1_MEDTR Armadillo/beta-catenin-like repeat protein; Found in the gene: LotjaGi1g1v0011000 LjG1.1_chr1 1362787 1371009 +
2 domain predictions
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LotjaGi1g1v0011000.2
n.a. Importin subunit alpha; TAIR: AT1G51350.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q05AL1|ARMC8_DANRE Armadillo repeat-containing protein 8; TrEMBL-Plants: tr|G7K4V1|G7K4V1_MEDTR Armadillo/beta-catenin-like repeat protein; Found in the gene: LotjaGi1g1v0011000 LjG1.1_chr1 1362928 1369877 +
2 domain predictions
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LotjaGi1g1v0026200.1
n.a. Cell differentiation protein rcd1, putative; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|I3SWY8|I3SWY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0026200 LjG1.1_chr1 3169051 3176046 +
2 domain predictions
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LotjaGi1g1v0026300.1
n.a. Cell differentiation protein RCD1 like; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|I3SWY8|I3SWY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0026300 LjG1.1_chr1 3182251 3187630 +
2 domain predictions
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LotjaGi1g1v0026300.2
n.a. Cell differentiation protein RCD1 like; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|I3SWY8|I3SWY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0026300 LjG1.1_chr1 3182339 3187546 +
2 domain predictions
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LotjaGi1g1v0052500.1
n.a. Proteasome-associated ECM29-like protein; TAIR: AT2G26780.2 ARM repeat superfamily protein; Swiss-Prot: sp|Q5VYK3|ECM29_HUMAN Proteasome-associated protein ECM29 homolog; TrEMBL-Plants: tr|G7KCU1|G7KCU1_MEDTR Proteasome-associated ECM29-like protein; Found in the gene: LotjaGi1g1v0052500 LjG1.1_chr1 7391907 7418016 -
2 domain predictions
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LotjaGi1g1v0063000.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit B; TAIR: AT4G15415.1 Protein phosphatase 2A regulatory B subunit family protein; Swiss-Prot: sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform; TrEMBL-Plants: tr|A0A0L9UV59|A0A0L9UV59_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0063000 LjG1.1_chr1 8764823 8774389 -
2 domain predictions
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LotjaGi1g1v0075000.1
n.a. U-box domain-containing protein; TAIR: AT3G46510.1 plant U-box 13; Swiss-Prot: sp|E4NKF8|PUB1_MEDTR U-box domain-containing protein 1; TrEMBL-Plants: tr|A0A151U1I0|A0A151U1I0_CAJCA U-box domain-containing protein 13; Found in the gene: LotjaGi1g1v0075000 LjG1.1_chr1 10838675 10840738 -
2 domain predictions
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LotjaGi1g1v0088100.1
n.a. Pumilio, putative; TAIR: AT2G29200.1 pumilio 1; Swiss-Prot: sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1; TrEMBL-Plants: tr|V7B957|V7B957_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0088100 LjG1.1_chr1 12777645 12786914 -
2 domain predictions
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LotjaGi1g1v0088100.2
n.a. Pumilio, putative; TAIR: AT2G29200.1 pumilio 1; Swiss-Prot: sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1; TrEMBL-Plants: tr|V7B957|V7B957_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0088100 LjG1.1_chr1 12777935 12786748 -
2 domain predictions
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LotjaGi1g1v0090500.1
n.a. Beta-adaptin-like protein; TAIR: AT3G55480.2 protein affected trafficking 2; Swiss-Prot: sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A; TrEMBL-Plants: tr|K7KAL6|K7KAL6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0090500 LjG1.1_chr1 13184884 13197250 +
2 domain predictions
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LotjaGi1g1v0099500.1
n.a. Armadillo repeat-containing protein 7; TAIR: AT5G37290.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q3UJZ3|ARMC7_MOUSE Armadillo repeat-containing protein 7; TrEMBL-Plants: tr|A0A1J7G0B2|A0A1J7G0B2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0099500 LjG1.1_chr1 15156849 15161997 -
2 domain predictions
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LotjaGi1g1v0099500.2
n.a. Armadillo repeat-containing protein 7; TAIR: AT5G37290.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q3UJZ3|ARMC7_MOUSE Armadillo repeat-containing protein 7; TrEMBL-Plants: tr|A0A1J7G0B2|A0A1J7G0B2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0099500 LjG1.1_chr1 15158215 15160522 -
2 domain predictions
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LotjaGi1g1v0108400.1
n.a. U-box domain-containing protein; TAIR: AT2G23140.1 RING/U-box superfamily protein with ARM repeat domain-containing protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|K7KAB1|K7KAB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0108400 LjG1.1_chr1 16904844 16910839 +
2 domain predictions
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LotjaGi1g1v0125800.1
n.a. U-box domain-containing protein; TAIR: AT4G12710.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3; TrEMBL-Plants: tr|I1MB75|I1MB75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0125800 LjG1.1_chr1 19828167 19833297 +
2 domain predictions
 –
LotjaGi1g1v0125800.2
n.a. U-box domain-containing protein; TAIR: AT4G12710.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3; TrEMBL-Plants: tr|I1MB75|I1MB75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0125800 LjG1.1_chr1 19828197 19833399 +
2 domain predictions
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LotjaGi1g1v0146700.1
n.a. Pumilio; TAIR: AT1G22240.1 pumilio 8; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|G7KAF0|G7KAF0_MEDTR Pumilio-family RNA-binding repeatprotein; Found in the gene: LotjaGi1g1v0146700 LjG1.1_chr1 24946372 24952330 -
2 domain predictions
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LotjaGi1g1v0157800.1
n.a. U-box domain-containing protein; TAIR: AT1G77460.1 CELLULOSE SYNTHASE INTERACTIVE 3; Swiss-Prot: sp|F4I718|CSI3_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 3; TrEMBL-Plants: tr|K7K8V7|K7K8V7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157800 LjG1.1_chr1 29291747 29303176 +
2 domain predictions
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LotjaGi1g1v0157800.2
n.a. U-box domain-containing protein; TAIR: AT1G77460.1 CELLULOSE SYNTHASE INTERACTIVE 3; Swiss-Prot: sp|F4I718|CSI3_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 3; TrEMBL-Plants: tr|K7K8V7|K7K8V7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157800 LjG1.1_chr1 29292594 29302153 +
2 domain predictions
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LotjaGi1g1v0160100.1
n.a. Sister chromatid cohesion PDS5-like protein; TAIR: AT1G77600.2 ARM repeat superfamily protein; Swiss-Prot: sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A; TrEMBL-Plants: tr|K7LX49|K7LX49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0160100 LjG1.1_chr1 29593299 29612220 -
2 domain predictions
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LotjaGi1g1v0183700.1
n.a. U-box domain-containing protein; TAIR: AT5G65200.1 plant U-box 38; Swiss-Prot: sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38; TrEMBL-Plants: tr|A0A072UZS8|A0A072UZS8_MEDTR Armadillo/beta-catenin repeat protein; Found in the gene: LotjaGi1g1v0183700 LjG1.1_chr1 35825876 35828591 -
2 domain predictions
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LotjaGi1g1v0202000.1
n.a. MMS19 nucleotide excision repair protein like; TAIR: AT5G48120.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q0WVF8|MMS19_ARATH MMS19 nucleotide excision repair protein homolog; TrEMBL-Plants: tr|K7M923|K7M923_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0202000 LjG1.1_chr1 42848657 42860849 +
2 domain predictions
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LotjaGi1g1v0209900.1
n.a. Calcium-binding protein 39; TAIR: AT5G18940.1 Mo25 family protein; Swiss-Prot: sp|Q29RI6|CAB39_BOVIN Calcium-binding protein 39; TrEMBL-Plants: tr|I3S517|I3S517_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0209900 LjG1.1_chr1 45931173 45936420 +
2 domain predictions
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