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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019734
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We have found 350 results. Now displaying 3 of 7 with 50 rows per page. This search has taken 5.456s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v2267380.2
n.a. PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1| chr4 31570141 31573133 +
4 domain predictions
1 GO term
Lj4g3v2290280.1
n.a. PREDICTED: P17/29C-like protein DDB_G0287399-like [Cicer arietinum] gi|502150923|ref|XP_004508191.1| chr4 31860588 31864960 -
4 domain predictions
1 GO term
Lj4g3v2298210.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr4 32095764 32099834 -
3 domain predictions
1 GO term
Lj4g3v2412560.1
n.a. DnaJ homolog subfamily C member-like protein [Medicago truncatula] gi|357463393|ref|XP_003601978.1| chr4 33479089 33480142 -
2 domain predictions
1 GO term
Lj4g3v2412570.1
n.a. DnaJ homolog subfamily C member-like protein [Medicago truncatula] gi|357463393|ref|XP_003601978.1| chr4 33480543 33482456 -
4 domain predictions
1 GO term
Lj4g3v2575050.1
n.a. PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max] gi|356528282|ref|XP_003532733.1| chr4 34492640 34494929 -
4 domain predictions
1 GO term
Lj4g3v2576100.1
n.a. PREDICTED: 70 kDa peptidyl-prolyl isomerase-like isoform X2 [Cicer arietinum] gi|502140947|ref|XP_004504386.1| chr4 34514137 34517544 +
4 domain predictions
1 GO term
Lj4g3v2742970.1
n.a. PREDICTED: tetratricopeptide repeat protein 1-like [Cicer arietinum] gi|502124508|ref|XP_004498557.1| chr4 36896514 36906390 +
4 domain predictions
1 GO term
Lj4g3v2754240.1
n.a. PREDICTED: protein TONSOKU-like [Glycine max] gi|356528540|ref|XP_003532859.1| chr4 37041080 37050459 -
3 domain predictions
1 GO term
Lj4g3v3014430.1
n.a. PREDICTED: nephrocystin-3-like [Cicer arietinum] gi|502138947|ref|XP_004503588.1| chr4 40070526 40073675 -
3 domain predictions
1 GO term
Lj4g3v3114860.1
n.a. PREDICTED: translocon at the outer membrane of chloroplasts 64-like isoform X1 [Cicer arietinum] gi|502138058|ref|XP_004503273.1| chr4 42155148 42161027 +
3 domain predictions
1 GO term
Lj4g3v3115170.2
n.a. PREDICTED: TPR repeat-containing thioredoxin TDX-like [Glycine max] gi|356524704|ref|XP_003530968.1| chr4 42247956 42251421 -
3 domain predictions
1 GO term
Lj5g3v0310180.1
n.a. PREDICTED: tetratricopeptide repeat protein 7B-like isoform X1 [Cicer arietinum] gi|502125613|ref|XP_004498994.1| chr5 3126641 3131034 +
3 domain predictions
1 GO term
Lj5g3v0310180.2
n.a. PREDICTED: tetratricopeptide repeat protein 7B-like isoform X1 [Cicer arietinum] gi|502125613|ref|XP_004498994.1| chr5 3126822 3133789 +
3 domain predictions
1 GO term
Lj5g3v0529120.1
n.a. heat shock protein 70 [Cucumis melo subsp]. melo] gi|307136298|gb|ADN34122.1| chr5 5897663 5902881 +
3 domain predictions
1 GO term
Lj5g3v0615000.1
n.a. PREDICTED: anaphase-promoting complex subunit 7-like [Cicer arietinum] gi|502115684|ref|XP_004495267.1| chr5 7485165 7486463 +
3 domain predictions
1 GO term
Lj5g3v0803050.1
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|356500631|ref|XP_003519135.1| chr5 11499189 11518097 +
4 domain predictions
1 GO term
Lj5g3v0942160.1
n.a. TPR domain protein [Medicago truncatula] gi|357440919|ref|XP_003590737.1| chr5 14341802 14344876 +
2 domain predictions
1 GO term
Lj5g3v1003910.1
n.a. PREDICTED: ETO1-like protein 1-like [Glycine max] gi|356500164|ref|XP_003518903.1| chr5 15981419 15986372 +
3 domain predictions
1 GO term
Lj5g3v1062500.1
n.a. PREDICTED: nephrocystin-3-like [Glycine max] gi|356548051|ref|XP_003542417.1| chr5 17271928 17276963 +
3 domain predictions
1 GO term
Lj5g3v1118430.1
n.a. PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max] gi|356537136|ref|XP_003537086.1| chr5 17889163 17896134 +
4 domain predictions
1 GO term
Lj5g3v1175630.1
n.a. PREDICTED: tetratricopeptide repeat protein 7B-like isoform X1 [Cicer arietinum] gi|502116242|ref|XP_004495349.1| chr5 18895181 18899382 +
3 domain predictions
1 GO term
Lj5g3v1175630.2
n.a. Tetratricopeptide repeat protein 7B [Medicago truncatula] gi|357441063|ref|XP_003590809.1| chr5 18895181 18899382 +
4 domain predictions
1 GO term
Lj5g3v1175630.3
n.a. PREDICTED: tetratricopeptide repeat protein 7B-like isoform X1 [Cicer arietinum] gi|502116242|ref|XP_004495349.1| chr5 18897756 18899382 +
4 domain predictions
1 GO term
Lj5g3v1303350.1
n.a. O-linked GlcNAc transferase like protein [Medicago truncatula] gi|357441255|ref|XP_003590905.1| chr5 20329688 20338844 -
3 domain predictions
1 GO term
Lj5g3v1303350.2
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like isoform X2 [Cicer arietinum] gi|502116696|ref|XP_004495555.1| chr5 20329688 20338844 -
4 domain predictions
1 GO term
Lj5g3v1499410.1
n.a. TPR repeat [Medicago truncatula] gi|124359146|gb|ABD28339.2| chr5 21956361 21959090 -
2 domain predictions
1 GO term
Lj5g3v1518810.1
n.a. PREDICTED: RNA polymerase II-associated protein 3-like isoform X1 [Cicer arietinum] gi|502116945|ref|XP_004495647.1| chr5 22134126 22137973 -
4 domain predictions
1 GO term
Lj5g3v1518810.2
n.a. PREDICTED: RNA polymerase II-associated protein 3-like isoform X5 [Cicer arietinum] gi|502116957|ref|XP_004495651.1| chr5 22135377 22137973 -
3 domain predictions
1 GO term
Lj5g3v1600720.1
n.a. Heat shock protein DnaJ with tetratricopeptide repeat isoform 1 [Theobroma cacao] gi|508703337|gb|EOX95233.1| chr5 23182155 23185116 +
2 domain predictions
1 GO term
Lj5g3v1853240.1
n.a. Tetratricopeptide repeat superfamily protein isoform 2 [Theobroma cacao] gi|508725610|gb|EOY17507.1| chr5 26483340 26487984 -
3 domain predictions
1 GO term
Lj5g3v2167330.1
n.a. PREDICTED: tetratricopeptide repeat protein 5-like [Glycine max] gi|356536234|ref|XP_003536644.1| chr5 31048098 31055159 +
2 domain predictions
1 GO term
Lj6g3v0003350.1
n.a. PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max] gi|356537369|ref|XP_003537200.1| chr6 184003 192872 -
3 domain predictions
1 GO term
Lj6g3v0084300.1
n.a. Calcium-binding tetratricopeptide family protein [Theobroma cacao] gi|508723021|gb|EOY14918.1| chr6 1098445 1101807 +
3 domain predictions
1 GO term
Lj6g3v0410450.1
n.a. Krm protein [Lotus japonicus] gi|2073450|emb|CAA73365.1| chr6 3738594 3752018 -
2 domain predictions
1 GO term
Lj6g3v0526140.1
n.a. PREDICTED: trafficking protein particle complex subunit 12-like isoform X1 [Cicer arietinum] gi|502135762|ref|XP_004502444.1| chr6 5289689 5292273 +
2 domain predictions
1 GO term
Lj6g3v0925630.1
n.a. PREDICTED: serine/threonine-protein phosphatase 5-like isoform X2 [Cicer arietinum] gi|502128536|ref|XP_004499995.1| chr6 9674307 9682813 -
3 domain predictions
1 GO term
Lj6g3v1093310.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr6 13317565 13321731 +
3 domain predictions
1 GO term
Lj6g3v1201200.1
n.a. PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] gi|356556372|ref|XP_003546500.1| chr6 14814693 14826796 -
4 domain predictions
1 GO term
Lj6g3v1629750.1
n.a. male sterility MS5 [Arabidopsis lyrata subsp]. lyrata] gi|297799972|ref|XP_002867870.1| chr6 18446657 18450118 -
3 domain predictions
1 GO term
Lj6g3v1931420.1
n.a. PREDICTED: anaphase-promoting complex subunit 7-like [Cicer arietinum] gi|502078747|ref|XP_004486042.1| chr6 21845046 21851173 -
6 domain predictions
1 GO term
Lj6g3v2218190.1
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356525874|ref|XP_003531546.1| chr6 25669908 25675635 -
4 domain predictions
1 GO term
Lj6g3v2218190.2
n.a. PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] gi|356525874|ref|XP_003531546.1| chr6 25669908 25675635 -
4 domain predictions
1 GO term
Ljchlorog3v0000150.1
n.a. Photosystem I assembly protein Ycf3 [Medicago truncatula] gi|358349401|ref|XP_003638726.1| chloro 17245 17472 +
3 domain predictions
1 GO term
Ljchlorog3v0000160.1
n.a. n.a. chloro 17279 17700 +
3 domain predictions
1 GO term
LotjaGi1g1v0116500.1
n.a. Ethylene-overproduction protein 1; TAIR: AT3G51770.2 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1; TrEMBL-Plants: tr|A0A151RT50|A0A151RT50_CAJCA Ethylene-overproduction protein 1; Found in the gene: LotjaGi1g1v0116500 LjG1.1_chr1 18331879 18337115 -
4 domain predictions
1 GO term
LotjaGi1g1v0147000.1
n.a. TPR repeat-containing thioredoxin TTL1; TAIR: AT5G65160.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1; TrEMBL-Plants: tr|G7KAB8|G7KAB8_MEDTR Inactive TPR repeat thioredoxin TTL3-like protein; Found in the gene: LotjaGi1g1v0147000 LjG1.1_chr1 25034265 25039254 +
3 domain predictions
1 GO term
LotjaGi1g1v0160000.1
n.a. Tetratricopeptide repeat; TAIR: AT4G08320.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8BJU0|SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha; TrEMBL-Plants: tr|K7M6V5|K7M6V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0160000 LjG1.1_chr1 29578932 29590136 -
3 domain predictions
1 GO term
LotjaGi1g1v0162800.1
n.a. Tetratricopeptide repeat protein; TAIR: AT1G77230.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6DI40|TTC33_DANRE Tetratricopeptide repeat protein 33; TrEMBL-Plants: tr|V7CWV5|V7CWV5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0162800 LjG1.1_chr1 30607337 30612348 -
3 domain predictions
1 GO term
LotjaGi1g1v0180900.1
n.a. Protein KINESIN LIGHT CHAIN-RELATED 3; TAIR: AT1G27500.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4HSX9|KLCR3_ARATH Protein KINESIN LIGHT CHAIN-RELATED 3; TrEMBL-Plants: tr|A0A0B2REY3|A0A0B2REY3_GLYSO Nephrocystin-3; Found in the gene: LotjaGi1g1v0180900 LjG1.1_chr1 35234636 35238800 +
3 domain predictions
1 GO term