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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
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We have found 891 results. Now displaying 18 of 18 with 50 rows per page. This search has taken 6.337s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0163800.1
n.a. Microtubule-associated TORTIFOLIA1-like protein; TAIR: AT4G27060.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9T041|TOR1_ARATH Microtubule-associated protein TORTIFOLIA1; TrEMBL-Plants: tr|A0A0R0IYG9|A0A0R0IYG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0163800 LjG1.1_chr6 44768003 44774527 +
2 domain predictions
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LotjaGi6g1v0173200.1
n.a. VAC14-like protein; TAIR: AT2G01690.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog; TrEMBL-Plants: tr|A0A072VR25|A0A072VR25_MEDTR VAC14-like protein; Found in the gene: LotjaGi6g1v0173200 LjG1.1_chr6 46165213 46195820 -
2 domain predictions
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LotjaGi6g1v0173200.2
n.a. VAC14-like protein; TAIR: AT2G01690.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog; TrEMBL-Plants: tr|A0A072VR25|A0A072VR25_MEDTR VAC14-like protein; Found in the gene: LotjaGi6g1v0173200 LjG1.1_chr6 46165277 46195805 -
2 domain predictions
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LotjaGi6g1v0173900.1
n.a. AP-3 complex subunit delta; TAIR: AT1G48760.1 delta-adaptin; Swiss-Prot: sp|Q9C744|AP3D_ARATH AP-3 complex subunit delta; TrEMBL-Plants: tr|G7L9R3|G7L9R3_MEDTR AP-3 complex subunit delta; Found in the gene: LotjaGi6g1v0173900 LjG1.1_chr6 46304230 46311483 -
2 domain predictions
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LotjaGi6g1v0196800.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit B; TAIR: AT4G15415.1 Protein phosphatase 2A regulatory B subunit family protein; Swiss-Prot: sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform; TrEMBL-Plants: tr|A0A0L9UV59|A0A0L9UV59_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0196800 LjG1.1_chr6 49379815 49386743 -
2 domain predictions
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LotjaGi6g1v0196900.1
n.a. Hsp70 nucleotide exchange factor FES1; TAIR: AT3G51980.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1; TrEMBL-Plants: tr|V7BJD9|V7BJD9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0196900 LjG1.1_chr6 49389121 49392399 -
2 domain predictions
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LotjaGi6g1v0217800_LC.1
n.a. Pumilio-like protein; TAIR: AT1G78160.1 pumilio 7; Swiss-Prot: sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c; TrEMBL-Plants: tr|V7BDT2|V7BDT2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0217800_LC LjG1.1_chr6 52004814 52006935 -
2 domain predictions
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LotjaGi6g1v0217800_LC.2
n.a. Pumilio; TAIR: AT2G29200.1 pumilio 1; Swiss-Prot: sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1; TrEMBL-Plants: tr|A0A067F6T8|A0A067F6T8_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0217800_LC LjG1.1_chr6 52004872 52005582 -
2 domain predictions
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LotjaGi6g1v0239800.1
n.a. Pumilio, putative; TAIR: AT3G20250.2 pumilio 5; Swiss-Prot: sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5; TrEMBL-Plants: tr|I1L1B8|I1L1B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0239800 LjG1.1_chr6 55085598 55094945 +
2 domain predictions
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LotjaGi6g1v0239800.2
n.a. Pumilio, putative; TAIR: AT3G20250.2 pumilio 5; Swiss-Prot: sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5; TrEMBL-Plants: tr|A0A0B2RRT4|A0A0B2RRT4_GLYSO Pumilio like 5; Found in the gene: LotjaGi6g1v0239800 LjG1.1_chr6 55086687 55092472 +
2 domain predictions
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LotjaGi6g1v0250000.1
n.a. ARM repeat superfamily protein; TAIR: AT4G15830.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q6A070|CREC1_MOUSE Crescerin-1; TrEMBL-Plants: tr|A0A0L9TCP5|A0A0L9TCP5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0250000 LjG1.1_chr6 56168722 56172026 -
2 domain predictions
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LotjaGi6g1v0255500.1
n.a. Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 LjG1.1_chr6 56823598 56828748 -
2 domain predictions
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LotjaGi6g1v0255500.2
n.a. Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 LjG1.1_chr6 56824749 56828363 -
2 domain predictions
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LotjaGi6g1v0255500.3
n.a. Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 LjG1.1_chr6 56824820 56827993 -
2 domain predictions
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LotjaGi6g1v0255500.4
n.a. Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 LjG1.1_chr6 56824820 56828363 -
2 domain predictions
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LotjaGi6g1v0255500.5
n.a. Importin subunit alpha; TAIR: AT4G16143.1 importin alpha isoform 2; Swiss-Prot: sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 LjG1.1_chr6 56824826 56828363 -
2 domain predictions
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LotjaGi6g1v0256800.1
n.a. Serine/threonine-protein phosphatase 4 regulatory subunit 3; TAIR: AT3G06670.1 binding protein; Swiss-Prot: sp|Q5SP90|PP4R3_DANRE Serine/threonine-protein phosphatase 4 regulatory subunit 3; TrEMBL-Plants: tr|I1MGG6|I1MGG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0256800 LjG1.1_chr6 56966257 56983122 +
2 domain predictions
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LotjaGi6g1v0256800.2
n.a. Serine/threonine-protein phosphatase 4 regulatory subunit 3; TAIR: AT3G06670.1 binding protein; Swiss-Prot: sp|Q5SP90|PP4R3_DANRE Serine/threonine-protein phosphatase 4 regulatory subunit 3; TrEMBL-Plants: tr|G7IG10|G7IG10_MEDTR Component of IIS longevity pathway SMK-1 domain protein; Found in the gene: LotjaGi6g1v0256800 LjG1.1_chr6 56966258 56982722 +
2 domain predictions
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LotjaGi6g1v0275800.1
n.a. E3 ubiquitin-protein ligase LIN-like protein, putative; TAIR: AT3G06880.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1; TrEMBL-Plants: tr|K7LBD3|K7LBD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0275800 LjG1.1_chr6 59267194 59272368 +
2 domain predictions
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LotjaGi6g1v0281200.1
n.a. Condensin-2 complex subunit D3; TAIR: AT4G15890.1 binding protein; Swiss-Prot: sp|Q6ZQK0|CNDD3_MOUSE Condensin-2 complex subunit D3; TrEMBL-Plants: tr|A0A0R0G114|A0A0R0G114_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0281200 LjG1.1_chr6 59761223 59767899 +
2 domain predictions
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LotjaGi6g1v0282400.1
n.a. Sister chromatid cohesion protein PDS5 like B; TAIR: AT5G47690.1 binding protein; Swiss-Prot: sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B; TrEMBL-Plants: tr|K7MAX3|K7MAX3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0282400 LjG1.1_chr6 59868711 59896165 -
2 domain predictions
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LotjaGi6g1v0285400.1
n.a. U-box domain-containing protein 4; TAIR: AT4G16490.1 ARM repeat superfamily protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|I1MFP6|I1MFP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0285400 LjG1.1_chr6 60222763 60295629 -
2 domain predictions
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LotjaGi6g1v0285400.2
n.a. U-box domain-containing protein 4; TAIR: AT4G16490.1 ARM repeat superfamily protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|I1MFP6|I1MFP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0285400 LjG1.1_chr6 60293988 60295440 -
2 domain predictions
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LotjaGi6g1v0286100.1
n.a. Calcium-binding protein 39, putative, expressed; TAIR: AT5G47540.1 Mo25 family protein; Swiss-Prot: sp|Q9FGK3|MO25N_ARATH Putative MO25-like protein At5g47540; TrEMBL-Plants: tr|G7IP83|G7IP83_MEDTR Calcium-binding protein; Found in the gene: LotjaGi6g1v0286100 LjG1.1_chr6 60346525 60352084 -
2 domain predictions
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LotjaGi6g1v0300400.1
n.a. ARM repeat superfamily protein; TAIR: AT5G18980.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5W041|ARMC3_HUMAN Armadillo repeat-containing protein 3; TrEMBL-Plants: tr|I1M166|I1M166_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0300400 LjG1.1_chr6 61806165 61810147 +
2 domain predictions
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LotjaGi6g1v0300400.3
n.a. ARM repeat superfamily protein; TAIR: AT5G18980.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5W041|ARMC3_HUMAN Armadillo repeat-containing protein 3; TrEMBL-Plants: tr|I1M166|I1M166_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0300400 LjG1.1_chr6 61806703 61809310 +
2 domain predictions
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LotjaGi6g1v0301600.1
n.a. Calcium-binding protein 39; TAIR: AT5G18940.1 Mo25 family protein; Swiss-Prot: sp|Q29RI6|CAB39_BOVIN Calcium-binding protein 39; TrEMBL-Plants: tr|I3S517|I3S517_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0301600 LjG1.1_chr6 61898442 61903902 -
2 domain predictions
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LotjaGi6g1v0305100.1
n.a. Kinase-like protein; TAIR: AT5G18700.1 kinase family with ARM repeat domain-containing protein; Swiss-Prot: sp|F4JY37|RUK_ARATH Serine/threonine-protein kinase RUNKEL; TrEMBL-Plants: tr|A0A0R0FYJ2|A0A0R0FYJ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0305100 LjG1.1_chr6 62236619 62243203 +
2 domain predictions
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LotjaGi6g1v0318800.1
n.a. U-box domain-containing protein; TAIR: AT1G29340.1 plant U-box 17; Swiss-Prot: sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17; TrEMBL-Plants: tr|A0A0B2ST26|A0A0B2ST26_GLYSO U-box domain-containing protein 17; Found in the gene: LotjaGi6g1v0318800 LjG1.1_chr6 63581768 63585853 -
2 domain predictions
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LotjaGi6g1v0323800.1
n.a. U-box domain-containing protein; TAIR: AT2G27430.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45; TrEMBL-Plants: tr|I1MER6|I1MER6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0323800 LjG1.1_chr6 63950730 63954217 +
2 domain predictions
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LotjaGi6g1v0334600_LC.1
n.a. Wings apart-like protein like; TAIR: AT1G61030.1 WAPL (Wings apart-like protein regulation of heterochromatin) protein; Swiss-Prot: sp|A9KNK6|PNP_CLOPH Polyribonucleotide nucleotidyltransferase; TrEMBL-Plants: tr|V7CPL5|V7CPL5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0334600_LC LjG1.1_chr6 64916453 64919126 +
2 domain predictions
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LotjaGi6g1v0334700.1
n.a. Wings apart-like protein like; TAIR: AT1G61030.1 WAPL (Wings apart-like protein regulation of heterochromatin) protein; Swiss-Prot: sp|Q65Z40|WAPL_MOUSE Wings apart-like protein homolog; TrEMBL-Plants: tr|V7CPL5|V7CPL5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0334700 LjG1.1_chr6 64922261 64928186 +
2 domain predictions
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LotjaGi6g1v0339300.1
n.a. Armadillo/beta-catenin repeat protein; TAIR: AT1G61350.1 ARM repeat superfamily protein; Swiss-Prot: sp|P39968|VAC8_YEAST Vacuolar protein 8; TrEMBL-Plants: tr|I1M2D0|I1M2D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339300 LjG1.1_chr6 65342041 65345311 +
2 domain predictions
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LotjaGi6g1v0339300.2
n.a. Armadillo/beta-catenin repeat protein; TAIR: AT1G61350.1 ARM repeat superfamily protein; Swiss-Prot: sp|P39968|VAC8_YEAST Vacuolar protein 8; TrEMBL-Plants: tr|I1M2D0|I1M2D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339300 LjG1.1_chr6 65342072 65345516 +
2 domain predictions
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LotjaGi6g1v0351100.1
n.a. Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100 LjG1.1_chr6 66309410 66315399 -
2 domain predictions
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LotjaGi6g1v0351100.2
n.a. Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100 LjG1.1_chr6 66309418 66315386 -
2 domain predictions
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LotjaGi6g1v0351100.3
n.a. Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100 LjG1.1_chr6 66311495 66315274 -
2 domain predictions
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LotjaGi6g1v0351100.4
n.a. Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100 LjG1.1_chr6 66311495 66315295 -
2 domain predictions
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LotjaGi6g1v0353100.1
n.a. Pumilio; TAIR: AT1G78160.1 pumilio 7; Swiss-Prot: sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic; TrEMBL-Plants: tr|A0A0B2RFZ1|A0A0B2RFZ1_GLYSO Putative pumilio like 7, chloroplastic; Found in the gene: LotjaGi6g1v0353100 LjG1.1_chr6 66549043 66554501 +
2 domain predictions
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LotjaGi6g1v0360700.3
n.a. Importin beta; TAIR: AT4G27640.1 ARM repeat superfamily protein; Swiss-Prot: sp|O60100|IMB4_SCHPO Probable importin subunit beta-4; TrEMBL-Plants: tr|I3SK10|I3SK10_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0360700 LjG1.1_chr6 67281697 67283292 -
2 domain predictions
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LotjaGi6g1v0360700.4
n.a. Importin beta; TAIR: AT4G27640.1 ARM repeat superfamily protein; Swiss-Prot: sp|O60100|IMB4_SCHPO Probable importin subunit beta-4; TrEMBL-Plants: tr|I3SK10|I3SK10_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0360700 LjG1.1_chr6 67281697 67288020 -
2 domain predictions
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