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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014710
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We have found 274 results. Now displaying 3 of 6 with 50 rows per page. This search has taken 5.551s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1533460.1
n.a. PREDICTED: rhicadhesin receptor-like [Cicer arietinum] gi|502117451|ref|XP_004495826.1| chr5 22495082 22497095 +
2 domain predictions
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Lj5g3v1537630.1
n.a. germin-like protein 16 [Glycine max] gi|196122036|gb|ACG69492.1| chr5 22606142 22607497 +
2 domain predictions
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Lj5g3v1696780.1
n.a. PREDICTED: auxin-binding protein 1-like [Glycine max] gi|356500228|ref|XP_003518935.1| chr5 24065046 24068004 +
2 domain predictions
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Lj5g3v1749250.1
n.a. RmlC-like jelly roll fold [Theobroma cacao] gi|508782966|gb|EOY30222.1| chr5 25022314 25027342 -
2 domain predictions
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Lj5g3v1749260.1
n.a. RmlC-like jelly roll fold [Theobroma cacao] gi|508782966|gb|EOY30222.1| chr5 25025134 25027342 -
2 domain predictions
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Lj5g3v2045460.1
n.a. PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1-like [Cicer arietinum] gi|502119608|ref|XP_004496677.1| chr5 29121881 29123497 -
2 domain predictions
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Lj5g3v2045630.1
n.a. convicilin storage protein 2 [Lotus japonicus] gi|206712296|emb|CAR78998.1| chr5 29271357 29274004 -
2 domain predictions
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Lj5g3v2045640.1
n.a. convicilin storage protein 2 [Lotus japonicus] gi|206712296|emb|CAR78998.1| chr5 29271420 29273738 -
2 domain predictions
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Lj5g3v2240920.1
n.a. PREDICTED: germin-like protein subfamily 3 member 2-like [Cicer arietinum] gi|502121018|ref|XP_004497160.1| chr5 32236442 32238145 +
2 domain predictions
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Lj6g3v0814380.1
n.a. PREDICTED: pirin-like protein-like [Glycine max] gi|356552737|ref|XP_003544719.1| chr6 7976468 7982942 -
2 domain predictions
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Lj6g3v0814380.2
n.a. PREDICTED: pirin-like protein-like [Glycine max] gi|356552737|ref|XP_003544719.1| chr6 7978551 7982942 -
2 domain predictions
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Lj6g3v0920600.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] gi|356560067|ref|XP_003548317.1| chr6 9334712 9347198 -
2 domain predictions
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Lj6g3v1049130.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Glycine max] gi|356508396|ref|XP_003522943.1| chr6 11932547 11941160 -
2 domain predictions
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Lj6g3v1077850.1
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] gi|356543300|ref|XP_003540100.1| chr6 12639111 12644707 +
2 domain predictions
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Lj6g3v1077850.2
n.a. PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] gi|356543300|ref|XP_003540100.1| chr6 12639111 12644707 +
2 domain predictions
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Lj6g3v1187540.1
n.a. PREDICTED: auxin-binding protein ABP19a-like [Cicer arietinum] gi|502165228|ref|XP_004513480.1| chr6 14619870 14621152 -
2 domain predictions
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Lj6g3v1629650.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357448633|ref|XP_003594592.1| chr6 18375259 18376003 +
2 domain predictions
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Lj6g3v1629680.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357448633|ref|XP_003594592.1| chr6 18385845 18386471 -
2 domain predictions
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Lj6g3v1934080.1
n.a. PREDICTED: potassium channel KAT1-like isoform X3 [Cicer arietinum] gi|502078700|ref|XP_004486028.1| chr6 22036446 22039527 +
2 domain predictions
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Lj6g3v2274490.1
n.a. Potassium channel [Medicago truncatula] gi|357445481|ref|XP_003593018.1| chr6 26475069 26482462 +
2 domain predictions
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Lj6g3v2274590.1
n.a. PREDICTED: LOW QUALITY PROTEIN: potassium channel AKT2/3-like [Cicer arietinum] gi|502076890|ref|XP_004485488.1| chr6 26507978 26511739 +
2 domain predictions
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LotjaGi1g1v0021700.1
n.a. Pirin-like protein; TAIR: AT1G50590.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9LPS9|PRNL1_ARATH Pirin-like protein At1g50590; TrEMBL-Plants: tr|A0A0B2SAS7|A0A0B2SAS7_GLYSO Pirin-like protein; Found in the gene: LotjaGi1g1v0021700 LjG1.1_chr1 2664937 2672575 -
2 domain predictions
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LotjaGi1g1v0021700.2
n.a. Pirin-like protein; TAIR: AT1G50590.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9LPS9|PRNL1_ARATH Pirin-like protein At1g50590; TrEMBL-Plants: tr|A0A0B2SAS7|A0A0B2SAS7_GLYSO Pirin-like protein; Found in the gene: LotjaGi1g1v0021700 LjG1.1_chr1 2668130 2672511 -
2 domain predictions
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LotjaGi1g1v0063100.1
n.a. RmlC-like cupins superfamily protein; TAIR: AT2G32180.1 plastid transcriptionally active 18; Swiss-Prot: sp|Q86AG7|KIME_DICDI Mevalonate kinase; TrEMBL-Plants: tr|B0BLJ6|B0BLJ6_LOTJA CM0545.540.nc protein; Found in the gene: LotjaGi1g1v0063100 LjG1.1_chr1 8764823 8774892 +
2 domain predictions
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LotjaGi1g1v0096100.1
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14566954 14578142 +
2 domain predictions
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LotjaGi1g1v0096100.2
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14571761 14577342 +
2 domain predictions
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LotjaGi1g1v0182200.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT3G48010.1 cyclic nucleotide-gated channel 16; Swiss-Prot: sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16; TrEMBL-Plants: tr|I1JX56|I1JX56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0182200 LjG1.1_chr1 35507413 35511941 -
2 domain predictions
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LotjaGi1g1v0207500.1
n.a. 2-aminoethanethiol dioxygenase; TAIR: AT1G18490.1 2-aminoethanethiol dioxygenase, putative (DUF1637); Swiss-Prot: sp|Q1G3U6|PCO3_ARATH Plant cysteine oxidase 3; TrEMBL-Plants: tr|A0A151TDS7|A0A151TDS7_CAJCA 2-aminoethanethiol dioxygenase; Found in the gene: LotjaGi1g1v0207500 LjG1.1_chr1 45265120 45269434 -
2 domain predictions
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LotjaGi1g1v0279900.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A151TS64|A0A151TS64_CAJCA Cyclic nucleotide-gated ion channel 1; Found in the gene: LotjaGi1g1v0279900 LjG1.1_chr1 68346062 68352829 -
2 domain predictions
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LotjaGi1g1v0279900.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A103YJC0|A0A103YJC0_CYNCS Cyclic nucleotide-binding domain-containing protein; Found in the gene: LotjaGi1g1v0279900 LjG1.1_chr1 68346319 68351411 -
2 domain predictions
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LotjaGi1g1v0279900.3
n.a. Cyclic nucleotide-gated channel; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A151TS64|A0A151TS64_CAJCA Cyclic nucleotide-gated ion channel 1; Found in the gene: LotjaGi1g1v0279900 LjG1.1_chr1 68346319 68351411 -
2 domain predictions
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LotjaGi1g1v0305800_LC.3
n.a. Cyclic nucleotide gated channel; TAIR: AT3G17690.1 cyclic nucleotide gated channel 19; Swiss-Prot: sp|Q9LDR2|CNG19_ARATH Putative cyclic nucleotide-gated ion channel 19; TrEMBL-Plants: tr|I3TA96|I3TA96_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0305800_LC LjG1.1_chr1 74481554 74484998 +
2 domain predictions
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LotjaGi1g1v0305800_LC.4
n.a. Cyclic nucleotide gated channel; TAIR: AT3G17690.1 cyclic nucleotide gated channel 19; Swiss-Prot: sp|Q9LDR2|CNG19_ARATH Putative cyclic nucleotide-gated ion channel 19; TrEMBL-Plants: tr|I3TA96|I3TA96_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0305800_LC LjG1.1_chr1 74481554 74484998 +
2 domain predictions
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LotjaGi1g1v0306100_LC.2
n.a. Cyclic nucleotide gated channel; TAIR: AT3G17690.1 cyclic nucleotide gated channel 19; Swiss-Prot: sp|Q9LDR2|CNG19_ARATH Putative cyclic nucleotide-gated ion channel 19; TrEMBL-Plants: tr|I3TA96|I3TA96_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0306100_LC LjG1.1_chr1 74546970 74551130 +
2 domain predictions
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LotjaGi1g1v0387000.1
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|K7KIL1|K7KIL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387000 LjG1.1_chr1 87027876 87035600 -
2 domain predictions
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LotjaGi1g1v0390800.1
n.a. Potassium channel; TAIR: AT4G32650.1 potassium channel protein; Swiss-Prot: sp|P92960|KAT3_ARATH Potassium channel KAT3; TrEMBL-Plants: tr|G7JC98|G7JC98_MEDTR Potassium channel KAT3 protein; Found in the gene: LotjaGi1g1v0390800 LjG1.1_chr1 87457680 87464882 -
2 domain predictions
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LotjaGi1g1v0396000.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT2G24610.1 cyclic nucleotide-gated channel 14; Swiss-Prot: sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14; TrEMBL-Plants: tr|V7AWW4|V7AWW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0396000 LjG1.1_chr1 88214924 88224569 +
2 domain predictions
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LotjaGi1g1v0475300.1
n.a. Acyl-CoA thioesterase; TAIR: AT1G01710.1 acyl-CoA thioesterase II; Swiss-Prot: sp|P58137|ACOT8_MOUSE Acyl-coenzyme A thioesterase 8; TrEMBL-Plants: tr|A0A0L9TCU4|A0A0L9TCU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0475300 LjG1.1_chr1 98611090 98618638 -
2 domain predictions
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LotjaGi1g1v0508700.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT5G15410.1 Cyclic nucleotide-regulated ion channel family protein; Swiss-Prot: sp|O65718|CNGC2_ARATH Cyclic nucleotide-gated ion channel 2; TrEMBL-Plants: tr|V7B108|V7B108_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0508700 LjG1.1_chr1 102725041 102732328 -
2 domain predictions
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LotjaGi1g1v0508700.2
n.a. Cyclic nucleotide-gated ion channel, putative; TAIR: AT5G15410.1 Cyclic nucleotide-regulated ion channel family protein; Swiss-Prot: sp|O65718|CNGC2_ARATH Cyclic nucleotide-gated ion channel 2; TrEMBL-Plants: tr|I1N4H5|I1N4H5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0508700 LjG1.1_chr1 102725487 102731073 -
2 domain predictions
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LotjaGi1g1v0549400.1
n.a. Mannose-6-phosphate isomerase; TAIR: AT3G02570.1 Mannose-6-phosphate isomerase, type I; Swiss-Prot: sp|Q9M884|MPI1_ARATH Mannose-6-phosphate isomerase 1; TrEMBL-Plants: tr|Q5BMC5|Q5BMC5_CYATE Phosphomannose isomerase; Found in the gene: LotjaGi1g1v0549400 LjG1.1_chr1 107992049 107997433 +
2 domain predictions
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LotjaGi1g1v0554500.1
n.a. Pirin-like protein; TAIR: AT2G43120.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SEE4|PIRL_SOLLC Pirin-like protein; TrEMBL-Plants: tr|I1N5F6|I1N5F6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0554500 LjG1.1_chr1 108677960 108680572 +
2 domain predictions
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LotjaGi1g1v0606100.1
n.a. Cyclic nucleotide-gated channel; TAIR: AT5G14870.1 cyclic nucleotide-gated channel 18; Swiss-Prot: sp|Q9LEQ3|CNG18_ARATH Cyclic nucleotide-gated ion channel 18; TrEMBL-Plants: tr|A0A1J7IQE7|A0A1J7IQE7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606100 LjG1.1_chr1 115090765 115095696 +
2 domain predictions
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LotjaGi1g1v0606100.2
n.a. Cyclic nucleotide-gated channel; TAIR: AT5G14870.1 cyclic nucleotide-gated channel 18; Swiss-Prot: sp|Q9LEQ3|CNG18_ARATH Cyclic nucleotide-gated ion channel 18; TrEMBL-Plants: tr|I1K949|I1K949_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606100 LjG1.1_chr1 115090880 115095811 +
2 domain predictions
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LotjaGi1g1v0620000.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SFF9|GL17_ARATH Germin-like protein subfamily 1 member 7; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620000 LjG1.1_chr1 116720262 116721759 -
2 domain predictions
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LotjaGi1g1v0620100.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT5G39100.1 germin-like protein 6; Swiss-Prot: sp|P92997|GL113_ARATH Germin-like protein subfamily 1 member 13; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620100 LjG1.1_chr1 116753793 116756129 -
2 domain predictions
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LotjaGi1g1v0647000.1
n.a. 2-aminoethanethiol dioxygenase-like protein; TAIR: AT5G39890.1 2-aminoethanethiol dioxygenase, putative (DUF1637); Swiss-Prot: sp|Q8LGJ5|PCO2_ARATH Plant cysteine oxidase 2; TrEMBL-Plants: tr|Q2HVC5|Q2HVC5_MEDTR 2-aminoethanethiol dioxygenase-like protein; Found in the gene: LotjaGi1g1v0647000 LjG1.1_chr1 120446486 120450088 +
2 domain predictions
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LotjaGi1g1v0702200.1
n.a. RmlC-like cupins superfamily protein; TAIR: AT3G04300.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q2SC73|Y5068_HAHCH UPF0345 protein HCH_05068; TrEMBL-Plants: tr|G7KYK0|G7KYK0_MEDTR RmlC-like cupins superfamily protein; Found in the gene: LotjaGi1g1v0702200 LjG1.1_chr1 127056246 127057170 -
2 domain predictions
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LotjaGi1g1v0709000.1
n.a. 11S seed storage globulin; TAIR: AT5G44120.3 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P11828|GLYG3_SOYBN Glycinin G3; TrEMBL-Plants: tr|B5U8K6|B5U8K6_LOTJA Legumin storage protein 5; Found in the gene: LotjaGi1g1v0709000 LjG1.1_chr1 127716683 127719526 +
2 domain predictions
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LotjaGi1g1v0709200.1
n.a. 11S seed storage globulin; TAIR: AT5G44120.3 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P11828|GLYG3_SOYBN Glycinin G3; TrEMBL-Plants: tr|B5U8K6|B5U8K6_LOTJA Legumin storage protein 5; Found in the gene: LotjaGi1g1v0709200 LjG1.1_chr1 127728792 127734101 -
2 domain predictions
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