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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017907
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We have found 245 results. Now displaying 3 of 5 with 50 rows per page. This search has taken 5.301s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. RING finger protein; TAIR: AT5G01960.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2; TrEMBL-Plants: tr|G7KDC0|G7KDC0_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi1g1v0128900 LjG1.1_chr1 20545812 20552421 -
n.a. RING/U-box superfamily protein, putative; TAIR: AT1G60360.1 RING/U-box superfamily protein; Swiss-Prot: sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A; TrEMBL-Plants: tr|G7K8T3|G7K8T3_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi1g1v0155600_LC LjG1.1_chr1 27659041 27660459 +
n.a. RING finger protein 141; TAIR: AT1G18660.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|D3YY23|LONF1_MOUSE LON peptidase N-terminal domain and RING finger protein 1; TrEMBL-Plants: tr|K7KKL8|K7KKL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0194200 LjG1.1_chr1 38489712 38501349 -
n.a. RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I1N2W9|I1N2W9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0440300 LjG1.1_chr1 93613829 93627944 -
n.a. RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|A0A151T8Z8|A0A151T8Z8_CAJCA RING finger protein 141 family; Found in the gene: LotjaGi1g1v0440300 LjG1.1_chr1 93618781 93626044 -
n.a. RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|A0A151T8Z8|A0A151T8Z8_CAJCA RING finger protein 141 family; Found in the gene: LotjaGi1g1v0440300 LjG1.1_chr1 93618781 93627312 -
n.a. RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3; TrEMBL-Plants: tr|A0A151T8Z8|A0A151T8Z8_CAJCA RING finger protein 141 family; Found in the gene: LotjaGi1g1v0440300 LjG1.1_chr1 93624920 93627312 -
n.a. RING finger protein; TAIR: AT5G01960.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2; TrEMBL-Plants: tr|V4S607|V4S607_9ROSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0460200 LjG1.1_chr1 96388912 96399793 +
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CEF8|RN222_MOUSE RING finger protein 222; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0508900 LjG1.1_chr1 102804294 102806703 +
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CEF8|RN222_MOUSE RING finger protein 222; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0508900 LjG1.1_chr1 102805500 102806300 +
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533200 LjG1.1_chr1 106061988 106064639 +
n.a. Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533200 LjG1.1_chr1 106063557 106064357 +
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G24800.1 proteolysis 1; Swiss-Prot: sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1; TrEMBL-Plants: tr|I1KZ98|I1KZ98_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0586200 LjG1.1_chr1 112604029 112612064 +
n.a. E3 ubiquitin-protein ligase BRE1-like 1; TAIR: AT2G44950.1 histone mono-ubiquitination 1; Swiss-Prot: sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1; TrEMBL-Plants: tr|K7LQS9|K7LQS9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0599300 LjG1.1_chr1 114009477 114052380 -
n.a. E3 ubiquitin-protein ligase BRE1-like protein; TAIR: AT2G44950.1 histone mono-ubiquitination 1; Swiss-Prot: sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1; TrEMBL-Plants: tr|A0A151R107|A0A151R107_CAJCA E3 ubiquitin-protein ligase BRE1-like 1; Found in the gene: LotjaGi1g1v0599300 LjG1.1_chr1 114010553 114033840 -
n.a. RING-finger E3 ubiquitin ligase, putative; TAIR: AT3G27330.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65; TrEMBL-Plants: tr|A0A151R9V9|A0A151R9V9_CAJCA Tripartite motif-containing protein 65; Found in the gene: LotjaGi1g1v0618400 LjG1.1_chr1 116528197 116530608 +
n.a. RING finger protein; TAIR: AT3G26730.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q32NQ8|RNF10_XENLA RING finger protein 10; TrEMBL-Plants: tr|K7MXM8|K7MXM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0632700 LjG1.1_chr1 118683188 118690573 -
n.a. RING/U-box superfamily protein; TAIR: AT3G58030.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185; TrEMBL-Plants: tr|A0A151TU67|A0A151TU67_CAJCA E3 ubiquitin-protein ligase RNF5; Found in the gene: LotjaGi1g1v0634000_LC LjG1.1_chr1 118799392 118801725 -
n.a. DNA/RNA helicase; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0660800 LjG1.1_chr1 122132295 122136527 -
n.a. breast cancer associated RING 1; TAIR: AT1G04020.1 breast cancer associated RING 1; Swiss-Prot: sp|F4I443|BARD1_ARATH BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr|A0A0B2PNV8|A0A0B2PNV8_GLYSO Protein BREAST CANCER SUSCEPTIBILITY 1 like; Found in the gene: LotjaGi1g1v0705900 LjG1.1_chr1 127440182 127446734 -
n.a. E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|A0A151SJ31|A0A151SJ31_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi1g1v0713200 LjG1.1_chr1 128129738 128137364 -
n.a. E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|A0A151SJ31|A0A151SJ31_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi1g1v0713200 LjG1.1_chr1 128130641 128136922 -
n.a. RING/U-box superfamily protein; TAIR: AT3G58030.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3; TrEMBL-Plants: tr|I3SAZ4|I3SAZ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0727100 LjG1.1_chr1 129846404 129850455 +
n.a. RING/U-box superfamily protein; TAIR: AT2G42030.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3; TrEMBL-Plants: tr|A0A0L9U7P9|A0A0L9U7P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0727200 LjG1.1_chr1 129854333 129856554 -
n.a. RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC LjG1.1_chr1 130075569 130085023 -
n.a. RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC LjG1.1_chr1 130075616 130084580 -
n.a. RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC LjG1.1_chr1 130075616 130084938 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT2G38920.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein; Swiss-Prot: sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like; TrEMBL-Plants: tr|A0A151TVX6|A0A151TVX6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0741800 LjG1.1_chr1 131564671 131568283 -
n.a. RING/U-box superfamily protein; TAIR: AT3G05670.1 RING/U-box protein; Swiss-Prot: sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7GZV4|A0A1J7GZV4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0746800 LjG1.1_chr1 131982397 131986302 +
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765300 LjG1.1_chr1 133847453 133850911 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765300 LjG1.1_chr1 133847735 133850702 -
n.a. E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.3 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|A0A067EH23|A0A067EH23_CITSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0782300_LC LjG1.1_chr1 135533751 135536810 +
n.a. E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|A0A0B2Q9V7|A0A0B2Q9V7_GLYSO E3 ubiquitin protein ligase DRIP2; Found in the gene: LotjaGi1g1v0782400 LjG1.1_chr1 135538973 135543434 +
n.a. RING/U-box superfamily protein; TAIR: AT3G07200.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c; TrEMBL-Plants: tr|A0A0D2SKU0|A0A0D2SKU0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi2g1v0003600 LjG1.1_chr2 1506926 1512294 +
n.a. RING/U-box superfamily protein; TAIR: AT3G07200.1 RING/U-box superfamily protein; Swiss-Prot: sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21; TrEMBL-Plants: tr|C6T066|C6T066_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0015700 LjG1.1_chr2 5537151 5548400 -
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|V7C2F7|V7C2F7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0146500 LjG1.1_chr2 52723847 52731478 -
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|G7ZV34|G7ZV34_MEDTR E3 ubiquitin-protein ligase XBOS32; Found in the gene: LotjaGi2g1v0146500 LjG1.1_chr2 52724204 52731073 -
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|I1L3B1|I1L3B1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0146500 LjG1.1_chr2 52724204 52731073 -
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|I1L3B1|I1L3B1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0146500 LjG1.1_chr2 52724204 52731073 -
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|I1L3B1|I1L3B1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0146500 LjG1.1_chr2 52724204 52731073 -
n.a. RING/U-box protein; TAIR: AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; Swiss-Prot: sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110; TrEMBL-Plants: tr|I1N6L6|I1N6L6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251700 LjG1.1_chr2 71726160 71733037 +
n.a. RING-type E3 ubiquitin ligase; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|C6TIH4|C6TIH4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0263600 LjG1.1_chr2 73296677 73297477 +
n.a. Ubiquitin-protein ligase, putative; TAIR: AT1G69330.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8K0W3|RN208_MOUSE RING finger protein 208; TrEMBL-Plants: tr|I1JEB9|I1JEB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0297200 LjG1.1_chr2 77206495 77208734 -
n.a. E3 ubiquitin-protein ligase RNF14; TAIR: AT1G32340.1 NDR1/HIN1-like 8; Swiss-Prot: sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14; TrEMBL-Plants: tr|V7CJB6|V7CJB6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0335000 LjG1.1_chr2 81104970 81111065 +
n.a. E3 ubiquitin-protein ligase RNF14; TAIR: AT1G32340.1 NDR1/HIN1-like 8; Swiss-Prot: sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14; TrEMBL-Plants: tr|G7KDN8|G7KDN8_MEDTR NDR1/HIN1-like protein; Found in the gene: LotjaGi2g1v0335100_LC LjG1.1_chr2 81112474 81116367 +
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|A0A1J7HFY3|A0A1J7HFY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363600 LjG1.1_chr2 86104191 86115357 -
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363600 LjG1.1_chr2 86111551 86115357 -
n.a. E3 ubiquitin-protein ligase; TAIR: AT2G23780.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q09463|RNF5_CAEEL RING finger protein 5; TrEMBL-Plants: tr|V7CIZ7|V7CIZ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0394400 LjG1.1_chr2 89190327 89192816 +
n.a. E3 ubiquitin-protein ligase; TAIR: AT2G23780.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q09463|RNF5_CAEEL RING finger protein 5; TrEMBL-Plants: tr|V7CIZ7|V7CIZ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0394400 LjG1.1_chr2 89190838 89191536 +
n.a. RING zinc finger protein, putative; TAIR: AT1G01350.1 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1; TrEMBL-Plants: tr|A0A151SCN7|A0A151SCN7_CAJCA Zinc finger CCCH domain-containing protein 1; Found in the gene: LotjaGi2g1v0458400 LjG1.1_chr2 95205486 95207719 +