Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036390
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 378 results. Now displaying 6 of 8 with 50 rows per page. This search has taken 5.628s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. O-methyltransferase, putative; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|Q6WUC2|7OMT_PAPSO (R,S)-reticuline 7-O-methyltransferase; TrEMBL-Plants: tr|I3SGC9|I3SGC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0457700 LjG1.1_chr3 87181471 87182714 +
n.a. Transcription factor; TAIR: AT5G22220.2 E2F transcription factor 1; Swiss-Prot: sp|Q9FV71|E2FB_ARATH Transcription factor E2FB; TrEMBL-Plants: tr|K7LQ43|K7LQ43_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0472800 LjG1.1_chr3 88995617 89001217 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0R0LCQ5|A0A0R0LCQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0502700 LjG1.1_chr3 92098841 92106783 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0R0LCQ5|A0A0R0LCQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0502700 LjG1.1_chr3 92098858 92105373 +
n.a. Heat shock transcription factor; TAIR: AT5G16820.1 heat shock factor 3; Swiss-Prot: sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1; TrEMBL-Plants: tr|G7JSS3|G7JSS3_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi3g1v0542200 LjG1.1_chr3 95873589 95876759 +
n.a. COP9 signalosome complex subunit 4; TAIR: AT5G42970.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4; TrEMBL-Plants: tr|I1L5P9|I1L5P9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0553000 LjG1.1_chr3 97042981 97048645 -
n.a. COP9 signalosome complex subunit-like protein; TAIR: AT5G42970.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4; TrEMBL-Plants: tr|A0A151TLK9|A0A151TLK9_CAJCA COP9 signalosome complex subunit 4; Found in the gene: LotjaGi3g1v0553000 LjG1.1_chr3 97043480 97046774 -
n.a. COP9 signalosome complex subunit-like protein; TAIR: AT5G42970.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4; TrEMBL-Plants: tr|A0A151TLK9|A0A151TLK9_CAJCA COP9 signalosome complex subunit 4; Found in the gene: LotjaGi3g1v0553000 LjG1.1_chr3 97043480 97046777 -
n.a. COP9 signalosome complex subunit 4; TAIR: AT5G42970.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4; TrEMBL-Plants: tr|I1L5P9|I1L5P9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0553000 LjG1.1_chr3 97043480 97048245 -
n.a. COP9 signalosome complex subunit 4; TAIR: AT5G42970.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4; TrEMBL-Plants: tr|I1L5P9|I1L5P9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0553000 LjG1.1_chr3 97043480 97048515 -
n.a. Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900 LjG1.1_chr4 1208539 1216723 +
n.a. Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900 LjG1.1_chr4 1208628 1215151 +
n.a. Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900 LjG1.1_chr4 1208628 1215151 +
n.a. Heat shock transcription factor; TAIR: AT5G62020.1 heat shock transcription factor B2A; Swiss-Prot: sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c; TrEMBL-Plants: tr|I3SY63|I3SY63_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0055500 LjG1.1_chr4 6689209 6691489 -
n.a. O-methyltransferase, putative; TAIR: AT4G35160.1 O-methyltransferase family protein; Swiss-Prot: sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase; TrEMBL-Plants: tr|I3RZV3|I3RZV3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0062900 LjG1.1_chr4 7796727 7799840 -
n.a. O-methyltransferase, putative; TAIR: AT4G35160.1 O-methyltransferase family protein; Swiss-Prot: sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase; TrEMBL-Plants: tr|I3RZV3|I3RZV3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0063300 LjG1.1_chr4 7882447 7887708 +
n.a. La; TAIR: AT3G19090.1 RNA-binding protein; Swiss-Prot: sp|Q9LHL3|LRP6C_ARATH La-related protein 6C; TrEMBL-Plants: tr|G7JMI2|G7JMI2_MEDTR LA-related protein 6 LA RNA-binding domain protein; Found in the gene: LotjaGi4g1v0071000 LjG1.1_chr4 9000885 9004624 +
n.a. Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|A0A0S3R7K1|A0A0S3R7K1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074700 LjG1.1_chr4 9544222 9555257 -
n.a. Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1MUG7|I1MUG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074700 LjG1.1_chr4 9545139 9554936 -
n.a. Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1MUG7|I1MUG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074700 LjG1.1_chr4 9546485 9554936 -
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A0L9VAR9|A0A0L9VAR9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156601 10161204 +
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156706 10161025 +
n.a. Histone H1; TAIR: AT5G08780.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|A0A072UMI4|A0A072UMI4_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi4g1v0078100_LC LjG1.1_chr4 10156779 10161339 +
n.a. Anaphase promoting complex subunit 2; TAIR: AT2G04660.1 anaphase-promoting complex/cyclosome 2; Swiss-Prot: sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2; TrEMBL-Plants: tr|G7JG99|G7JG99_MEDTR Anaphase promoting complex subunit 2; Found in the gene: LotjaGi4g1v0090400 LjG1.1_chr4 11970615 11979740 +
n.a. Anaphase promoting complex subunit 2; TAIR: AT2G04660.1 anaphase-promoting complex/cyclosome 2; Swiss-Prot: sp|Q8H1U5|APC2_ARATH Anaphase-promoting complex subunit 2; TrEMBL-Plants: tr|G7JG99|G7JG99_MEDTR Anaphase promoting complex subunit 2; Found in the gene: LotjaGi4g1v0090400 LjG1.1_chr4 11970887 11979055 +
n.a. MYB transcription factor; TAIR: AT1G49950.1 telomere repeat binding factor 1; Swiss-Prot: sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1; TrEMBL-Plants: tr|K7KPH5|K7KPH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0094200 LjG1.1_chr4 12653479 12667288 +
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0R0LCQ5|A0A0R0LCQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099400 LjG1.1_chr4 13480330 13486469 -
n.a. Heat shock transcription factor; TAIR: AT4G36990.1 heat shock factor 4; Swiss-Prot: sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24; TrEMBL-Plants: tr|A0A0L9TIM3|A0A0L9TIM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0105200 LjG1.1_chr4 14646159 14649860 +
n.a. La-related protein; TAIR: AT4G35890.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94K80|LRP1C_ARATH La-related protein 1C; TrEMBL-Plants: tr|A0A0L9TP03|A0A0L9TP03_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131900 LjG1.1_chr4 19307229 19311094 -
n.a. Transcription factor; TAIR: AT5G03415.1 Transcription factor DP; Swiss-Prot: sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB; TrEMBL-Plants: tr|A0A151SD62|A0A151SD62_CAJCA Transcription factor Dp-1; Found in the gene: LotjaGi4g1v0140500 LjG1.1_chr4 21225633 21240494 -
n.a. 26S proteasome non-ATPase regulatory subunit; TAIR: AT4G24820.1 26S proteasome regulatory subunit Rpn7; Swiss-Prot: sp|Q93Y35|PSMD6_ARATH 26S proteasome non-ATPase regulatory subunit 6 homolog; TrEMBL-Plants: tr|A0A151TE54|A0A151TE54_CAJCA Putative 26S proteasome non-ATPase regulatory subunit 6; Found in the gene: LotjaGi4g1v0224400 LjG1.1_chr4 53011759 53023227 -
n.a. 26S proteasome non-ATPase regulatory subunit; TAIR: AT4G24820.1 26S proteasome regulatory subunit Rpn7; Swiss-Prot: sp|Q93Y35|PSMD6_ARATH 26S proteasome non-ATPase regulatory subunit 6 homolog; TrEMBL-Plants: tr|A0A151TE54|A0A151TE54_CAJCA Putative 26S proteasome non-ATPase regulatory subunit 6; Found in the gene: LotjaGi4g1v0224400 LjG1.1_chr4 53012182 53023099 -
n.a. 26S proteasome non-ATPase regulatory subunit; TAIR: AT4G24820.1 26S proteasome regulatory subunit Rpn7; Swiss-Prot: sp|Q93Y35|PSMD6_ARATH 26S proteasome non-ATPase regulatory subunit 6 homolog; TrEMBL-Plants: tr|A0A151TE54|A0A151TE54_CAJCA Putative 26S proteasome non-ATPase regulatory subunit 6; Found in the gene: LotjaGi4g1v0224400 LjG1.1_chr4 53012479 53022131 -
n.a. E2F transcription factor; TAIR: AT3G48160.2 DP-E2F-like 1; Swiss-Prot: sp|Q8LSZ4|E2FE_ARATH E2F transcription factor-like E2FE; TrEMBL-Plants: tr|A0A151R8W6|A0A151R8W6_CAJCA Transcription factor E2F7; Found in the gene: LotjaGi4g1v0236800 LjG1.1_chr4 55161128 55165521 +
n.a. Replication protein A subunit; TAIR: AT3G02920.1 Replication protein A, subunit RPA32; Swiss-Prot: sp|Q8LFJ8|RFA2B_ARATH Replication protein A 32 kDa subunit B; TrEMBL-Plants: tr|A0A151SRU2|A0A151SRU2_CAJCA Replication factor A protein 2; Found in the gene: LotjaGi4g1v0301800 LjG1.1_chr4 67675579 67679830 +
n.a. Heat shock transcription factor; TAIR: AT2G26150.1 heat shock transcription factor A2; Swiss-Prot: sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30; TrEMBL-Plants: tr|V7CBJ1|V7CBJ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0310700 LjG1.1_chr4 68692458 68694870 +
n.a. Eukaryotic translation initiation factor 3 subunit K; TAIR: AT4G33250.1 eukaryotic translation initiation factor 3K; Swiss-Prot: sp|Q94HF1|EIF3K_ORYSJ Eukaryotic translation initiation factor 3 subunit K; TrEMBL-Plants: tr|I3SP58|I3SP58_LOTJA Eukaryotic translation initiation factor 3 subunit K; Found in the gene: LotjaGi4g1v0320000 LjG1.1_chr4 69764391 69767820 -
n.a. Eukaryotic translation initiation factor 3 subunit K; TAIR: AT4G33250.1 eukaryotic translation initiation factor 3K; Swiss-Prot: sp|Q94HF1|EIF3K_ORYSJ Eukaryotic translation initiation factor 3 subunit K; TrEMBL-Plants: tr|I3SP58|I3SP58_LOTJA Eukaryotic translation initiation factor 3 subunit K; Found in the gene: LotjaGi4g1v0320000 LjG1.1_chr4 69765108 69767701 -
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 LjG1.1_chr4 72419983 72427534 +
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 LjG1.1_chr4 72420018 72426572 +
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 LjG1.1_chr4 72420025 72426572 +
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 LjG1.1_chr4 72420316 72426572 +
n.a. Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|A0A072USG4|A0A072USG4_MEDTR Cullin 3B; Found in the gene: LotjaGi4g1v0344300 LjG1.1_chr4 72426109 72426572 +
n.a. Heat Stress Transcription Factor family protein; TAIR: AT4G13980.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94BZ5|HSFA5_ARATH Heat stress transcription factor A-5; TrEMBL-Plants: tr|I1K3S2|I1K3S2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0371300 LjG1.1_chr4 75071439 75075674 +
n.a. Heat shock transcription factor; TAIR: AT4G18880.1 heat shock transcription factor A4A; Swiss-Prot: sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a; TrEMBL-Plants: tr|R9R6C4|R9R6C4_9FABA Heat stress transcription factor A-4a-like protein; Found in the gene: LotjaGi4g1v0381000 LjG1.1_chr4 75995795 76001066 -
n.a. 26S proteasome non-ATPase regulatory subunit; TAIR: AT5G09900.2 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp|Q9FIB6|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr|V7CNL2|V7CNL2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0405800 LjG1.1_chr4 78210282 78216708 +