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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017451
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 414 results. Now displaying 7 of 9 with 50 rows per page. This search has taken 6.329s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0739300.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0739300 LjG1.1_chr1 131345322 131347714 +
2 domain predictions
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LotjaGi1g1v0759400.1
n.a. F-box protein interaction domain protein; TAIR: AT1G33530.1 F-box family protein; Swiss-Prot: sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530; TrEMBL-Plants: tr|A0A072UAB3|A0A072UAB3_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0759400 LjG1.1_chr1 133254573 133262363 -
2 domain predictions
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LotjaGi1g1v0759400.2
n.a. F-box protein interaction domain protein; TAIR: AT1G33530.1 F-box family protein; Swiss-Prot: sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530; TrEMBL-Plants: tr|A0A072UAB3|A0A072UAB3_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0759400 LjG1.1_chr1 133254573 133262407 -
2 domain predictions
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LotjaGi1g1v0759400.3
n.a. F-box protein interaction domain protein; TAIR: AT1G33530.1 F-box family protein; Swiss-Prot: sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530; TrEMBL-Plants: tr|A0A072UAB3|A0A072UAB3_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0759400 LjG1.1_chr1 133254607 133262370 -
2 domain predictions
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LotjaGi1g1v0785900.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7H7J9|A0A1J7H7J9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0785900 LjG1.1_chr1 135838703 135840470 -
2 domain predictions
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LotjaGi1g1v0788700.1
n.a. F-box family protein; TAIR: AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590; TrEMBL-Plants: tr|A0A0L9VLT9|A0A0L9VLT9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0788700 LjG1.1_chr1 136114630 136117242 +
2 domain predictions
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LotjaGi1g1v0790100.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0790100 LjG1.1_chr1 136201085 136206782 -
2 domain predictions
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LotjaGi1g1v0790100.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0790100 LjG1.1_chr1 136201085 136206782 -
2 domain predictions
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LotjaGi1g1v0790100.3
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0790100 LjG1.1_chr1 136201908 136206762 -
2 domain predictions
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LotjaGi1g1v0790100.4
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0790100 LjG1.1_chr1 136202016 136206565 -
2 domain predictions
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LotjaGi2g1v0059600.1
n.a. F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|G7L080|G7L080_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi2g1v0059600 LjG1.1_chr2 12409926 12415020 -
2 domain predictions
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LotjaGi2g1v0101300.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7G5U0|A0A1J7G5U0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0101300 LjG1.1_chr2 33662685 33664005 -
2 domain predictions
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LotjaGi2g1v0219000.1
n.a. F-box family protein, putative; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7H7J9|A0A1J7H7J9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0219000 LjG1.1_chr2 67381491 67401189 -
2 domain predictions
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LotjaGi2g1v0230400.1
n.a. F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0230400 LjG1.1_chr2 68990060 68993279 +
2 domain predictions
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LotjaGi2g1v0230400.2
n.a. F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0230400 LjG1.1_chr2 68990994 68993130 +
2 domain predictions
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LotjaGi2g1v0242600.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242600 LjG1.1_chr2 70566785 70568197 -
2 domain predictions
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LotjaGi2g1v0242600.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242600 LjG1.1_chr2 70566785 70569568 -
2 domain predictions
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LotjaGi2g1v0242700.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242700 LjG1.1_chr2 70575796 70578300 -
2 domain predictions
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LotjaGi2g1v0242800.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242800 LjG1.1_chr2 70594833 70599450 -
2 domain predictions
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LotjaGi2g1v0242800.2
n.a. F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242800 LjG1.1_chr2 70594833 70612933 -
2 domain predictions
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LotjaGi2g1v0242800.3
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242800 LjG1.1_chr2 70595211 70599404 -
2 domain predictions
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LotjaGi2g1v0242800.4
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0242800 LjG1.1_chr2 70611492 70612936 -
2 domain predictions
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LotjaGi2g1v0243000.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi2g1v0243000 LjG1.1_chr2 70604514 70606931 -
2 domain predictions
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LotjaGi2g1v0299800.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi2g1v0299800 LjG1.1_chr2 77414776 77424934 +
2 domain predictions
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LotjaGi2g1v0299800.4
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi2g1v0299800 LjG1.1_chr2 77414900 77424927 +
2 domain predictions
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LotjaGi2g1v0299900.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7G5U0|A0A1J7G5U0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0299900 LjG1.1_chr2 77426816 77428324 +
2 domain predictions
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LotjaGi2g1v0300000.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi2g1v0300000 LjG1.1_chr2 77436413 77438965 +
2 domain predictions
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LotjaGi2g1v0446400.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7H7J9|A0A1J7H7J9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446400 LjG1.1_chr2 94119356 94121393 -
2 domain predictions
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LotjaGi2g1v0448900.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi2g1v0448900 LjG1.1_chr2 94267299 94268558 -
2 domain predictions
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LotjaGi3g1v0013800.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0013800 LjG1.1_chr3 1497012 1498519 +
2 domain predictions
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LotjaGi3g1v0014300.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0014300 LjG1.1_chr3 1522242 1523749 +
2 domain predictions
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LotjaGi3g1v0014400.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0014400 LjG1.1_chr3 1530780 1532332 +
2 domain predictions
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LotjaGi3g1v0035300.1
n.a. F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A072VI40|A0A072VI40_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi3g1v0035300 LjG1.1_chr3 3790460 3796207 +
2 domain predictions
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LotjaGi3g1v0035400.1
n.a. F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A072U3C2|A0A072U3C2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi3g1v0035400 LjG1.1_chr3 3796296 3800010 -
2 domain predictions
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LotjaGi3g1v0178600.1
n.a. F-box family protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A151S8F0|A0A151S8F0_CAJCA F-box/kelch-repeat protein family; Found in the gene: LotjaGi3g1v0178600 LjG1.1_chr3 24872096 24875882 +
2 domain predictions
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LotjaGi3g1v0340500.1
n.a. F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0340500 LjG1.1_chr3 71520768 71524637 +
2 domain predictions
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LotjaGi3g1v0389900.1
n.a. F-box family protein; TAIR: AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590; TrEMBL-Plants: tr|V7ANN0|V7ANN0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0389900 LjG1.1_chr3 78771109 78774779 +
2 domain predictions
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LotjaGi3g1v0389900.2
n.a. F-box family protein; TAIR: AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590; TrEMBL-Plants: tr|V7ANN0|V7ANN0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0389900 LjG1.1_chr3 78773238 78774455 +
2 domain predictions
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LotjaGi3g1v0390000.1
n.a. F-box family protein; TAIR: AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590; TrEMBL-Plants: tr|A0A0L9VLT9|A0A0L9VLT9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0390000 LjG1.1_chr3 78785706 78789215 +
2 domain predictions
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LotjaGi3g1v0424400.1
n.a. F-box protein family; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83368252 83372013 -
2 domain predictions
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LotjaGi3g1v0424400.2
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83368651 83376415 -
2 domain predictions
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LotjaGi3g1v0424400.3
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83368674 83376419 -
2 domain predictions
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LotjaGi3g1v0424400.4
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83368690 83376397 -
2 domain predictions
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LotjaGi3g1v0424400.5
n.a. F-box protein family; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83368713 83372002 -
2 domain predictions
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LotjaGi3g1v0424400.6
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83372601 83376480 -
2 domain predictions
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LotjaGi3g1v0424400.7
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83372601 83376480 -
2 domain predictions
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LotjaGi3g1v0424400.8
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 LjG1.1_chr3 83372905 83376429 -
2 domain predictions
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LotjaGi3g1v0424500.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424500 LjG1.1_chr3 83382640 83385672 -
2 domain predictions
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LotjaGi3g1v0467000_LC.1
n.a. F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0467000_LC LjG1.1_chr3 88261207 88261921 -
2 domain predictions
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LotjaGi3g1v0468800.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0468800 LjG1.1_chr3 88441795 88451435 +
2 domain predictions
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