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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016177
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We have found 343 results. Now displaying 7 of 7 with 50 rows per page. This search has taken 5.673s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0405900.1
n.a. Ethylene-responsive transcription factor; TAIR: AT2G33710.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112; TrEMBL-Plants: tr|B3IX36|B3IX36_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi4g1v0405900 LjG1.1_chr4 78216942 78220005 -
2 domain predictions
1 GO term
LotjaGi4g1v0422400.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G61890.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114; TrEMBL-Plants: tr|A0A151SY38|A0A151SY38_CAJCA Ethylene-responsive transcription factor ERF114 family; Found in the gene: LotjaGi4g1v0422400 LjG1.1_chr4 79740668 79744993 +
2 domain predictions
1 GO term
LotjaGi4g1v0423500.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851388 79860332 -
2 domain predictions
1 GO term
LotjaGi4g1v0423500.2
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851388 79860332 -
2 domain predictions
1 GO term
LotjaGi4g1v0423500.3
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851388 79860332 -
2 domain predictions
1 GO term
LotjaGi4g1v0423500.4
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|I1KP74|I1KP74_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851907 79860289 -
2 domain predictions
1 GO term
LotjaGi4g1v0434600.1
n.a. ethylene-responsive transcription factor; TAIR: AT1G64380.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7W2|ERF61_ARATH Ethylene-responsive transcription factor ERF061; TrEMBL-Plants: tr|I1JAC9|I1JAC9_SOYBN AP2-EREBP transcription factor; Found in the gene: LotjaGi4g1v0434600 LjG1.1_chr4 80813306 80814766 -
2 domain predictions
1 GO term
LotjaGi4g1v0446300.1
n.a. ethylene-responsive transcription factor; TAIR: AT5G25810.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY; TrEMBL-Plants: tr|V7CTS7|V7CTS7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0446300 LjG1.1_chr4 81901491 81902909 -
2 domain predictions
1 GO term
LotjaGi4g1v0452400_LC.1
n.a. Ethylene-responsive transcription factor; TAIR: AT1G49120.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9M9B2|EF117_ARATH Ethylene-responsive transcription factor ERF117; TrEMBL-Plants: tr|K7L0J3|K7L0J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0452400_LC LjG1.1_chr4 82477269 82478264 +
2 domain predictions
1 GO term
LotjaGi5g1v0011100.1
n.a. Dehydration responsive element binding transcription factor; TAIR: AT1G75490.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LQZ2|DRE2D_ARATH Dehydration-responsive element-binding protein 2D; TrEMBL-Plants: tr|A0A0R4J3F8|A0A0R4J3F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0011100 LjG1.1_chr5 2568840 2570345 -
2 domain predictions
1 GO term
LotjaGi5g1v0026800.1
n.a. Ethylene-responsive transcription factor; TAIR: AT1G46768.1 related to AP2 1; Swiss-Prot: sp|Q8LC30|RAP21_ARATH Ethylene-responsive transcription factor RAP2-1; TrEMBL-Plants: tr|Q7Y0Y9|Q7Y0Y9_SOYBN AP2-EREBP transcription factor; Found in the gene: LotjaGi5g1v0026800 LjG1.1_chr5 4472053 4473433 +
2 domain predictions
1 GO term
LotjaGi5g1v0092100.1
n.a. C-repeat binding transcription factor; TAIR: AT4G25470.1 C-repeat/DRE binding factor 2; Swiss-Prot: sp|A2WZI4|DRE1F_ORYSI Dehydration-responsive element-binding protein 1F; TrEMBL-Plants: tr|I1LZG3|I1LZG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0092100 LjG1.1_chr5 16101017 16101892 -
2 domain predictions
1 GO term
LotjaGi5g1v0136800_LC.1
n.a. AP2-like ethylene-responsive transcription factor; TAIR: AT4G37750.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT; TrEMBL-Plants: tr|M0UEK3|M0UEK3_HORVV Uncharacterized protein; Found in the gene: LotjaGi5g1v0136800_LC LjG1.1_chr5 32587108 32593174 +
2 domain predictions
1 GO term
LotjaGi5g1v0180000.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|I1LYJ4|I1LYJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0180000 LjG1.1_chr5 45768161 45769524 +
2 domain predictions
1 GO term
LotjaGi5g1v0180100.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|A0A072VKJ4|A0A072VKJ4_MEDTR Ethylene-responsive transcription factor 1B; Found in the gene: LotjaGi5g1v0180100 LjG1.1_chr5 45831193 45831985 +
2 domain predictions
1 GO term
LotjaGi5g1v0180200.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|A0A072VKJ4|A0A072VKJ4_MEDTR Ethylene-responsive transcription factor 1B; Found in the gene: LotjaGi5g1v0180200 LjG1.1_chr5 45906720 45909145 +
2 domain predictions
1 GO term
LotjaGi5g1v0180400.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23230.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098; TrEMBL-Plants: tr|C6T1T9|C6T1T9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0180400 LjG1.1_chr5 45950429 45951316 -
2 domain predictions
1 GO term
LotjaGi5g1v0180600.1
n.a. Ethylene-responsive transcription factor; TAIR: AT2G31230.1 ethylene-responsive element binding factor 15; Swiss-Prot: sp|Q8VYM0|ERF93_ARATH Ethylene-responsive transcription factor 15; TrEMBL-Plants: tr|A0A140WWG0|A0A140WWG0_LOTCO AP2/ERF; Found in the gene: LotjaGi5g1v0180600 LjG1.1_chr5 45989666 45991441 +
2 domain predictions
1 GO term
LotjaGi5g1v0184300.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23230.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098; TrEMBL-Plants: tr|A0A059D1V2|A0A059D1V2_EUCGR Uncharacterized protein; Found in the gene: LotjaGi5g1v0184300 LjG1.1_chr5 46884695 46885592 +
2 domain predictions
1 GO term
LotjaGi5g1v0184400.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23230.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098; TrEMBL-Plants: tr|A0A151T181|A0A151T181_CAJCA Ethylene-responsive transcription factor ERF098 family; Found in the gene: LotjaGi5g1v0184400 LjG1.1_chr5 46916917 46917733 +
2 domain predictions
1 GO term
LotjaGi5g1v0184700.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|B3IX26|B3IX26_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi5g1v0184700 LjG1.1_chr5 47021584 47023437 +
2 domain predictions
1 GO term
LotjaGi5g1v0184700.2
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|B3IX26|B3IX26_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi5g1v0184700 LjG1.1_chr5 47021656 47022339 +
2 domain predictions
1 GO term
LotjaGi5g1v0248300.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G16770.1 ethylene-responsive element binding protein; Swiss-Prot: sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3; TrEMBL-Plants: tr|A0A096ZG76|A0A096ZG76_LOTCO AP2/ERF; Found in the gene: LotjaGi5g1v0248300 LjG1.1_chr5 55695879 55697673 -
2 domain predictions
1 GO term
LotjaGi5g1v0259700.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SHA3|I3SHA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259700 LjG1.1_chr5 56821301 56823132 -
2 domain predictions
1 GO term
LotjaGi5g1v0259800.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SU39|I3SU39_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259800 LjG1.1_chr5 56831668 56833917 -
2 domain predictions
1 GO term
LotjaGi5g1v0289200.1
n.a. Ethylene-responsive transcription factor; TAIR: AT2G33710.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112; TrEMBL-Plants: tr|A0A1J7HVF0|A0A1J7HVF0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289200 LjG1.1_chr5 60592143 60595087 -
2 domain predictions
1 GO term
LotjaGi5g1v0304800.1
n.a. Dehydration-responsive element binding factor protein; TAIR: AT5G52020.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FJ90|ERF25_ARATH Ethylene-responsive transcription factor ERF025; TrEMBL-Plants: tr|I1LDV3|I1LDV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304800 LjG1.1_chr5 62296210 62298043 +
2 domain predictions
1 GO term
LotjaGi5g1v0340400.1
n.a. Ethylene-responsive transcription factor; TAIR: AT1G68550.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9CA27|EF118_ARATH Ethylene-responsive transcription factor ERF118; TrEMBL-Plants: tr|B0BLJ1|B0BLJ1_LOTJA CM0545.620.nc protein; Found in the gene: LotjaGi5g1v0340400 LjG1.1_chr5 65775998 65778751 -
2 domain predictions
1 GO term
LotjaGi5g1v0340400.2
n.a. Ethylene-responsive transcription factor; TAIR: AT1G68550.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9CA27|EF118_ARATH Ethylene-responsive transcription factor ERF118; TrEMBL-Plants: tr|B0BLJ1|B0BLJ1_LOTJA CM0545.620.nc protein; Found in the gene: LotjaGi5g1v0340400 LjG1.1_chr5 65776040 65778758 -
2 domain predictions
1 GO term
LotjaGi6g1v0006000.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|G7I5D9|G7I5D9_MEDTR Ethylene-responsive transcription factor 1B; Found in the gene: LotjaGi6g1v0006000 LjG1.1_chr6 1231038 1232021 -
2 domain predictions
1 GO term
LotjaGi6g1v0017800.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G51190.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5; TrEMBL-Plants: tr|I3SB66|I3SB66_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0017800 LjG1.1_chr6 3102320 3104047 -
2 domain predictions
1 GO term
LotjaGi6g1v0044600.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6; TrEMBL-Plants: tr|A0A0L9VDI0|A0A0L9VDI0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0044600 LjG1.1_chr6 8401581 8403118 -
2 domain predictions
1 GO term
LotjaGi6g1v0155200.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT3G20310.1 ethylene response factor 7; Swiss-Prot: sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7; TrEMBL-Plants: tr|A0A072UXV4|A0A072UXV4_MEDTR Ethylene response factor; Found in the gene: LotjaGi6g1v0155200 LjG1.1_chr6 43379907 43382224 -
2 domain predictions
1 GO term
LotjaGi6g1v0199500.1
n.a. AP2-like ethylene-responsive transcription factor family; TAIR: AT1G16060.1 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|A0A151UF47|A0A151UF47_CAJCA AP2-like ethylene-responsive transcription factor family; Found in the gene: LotjaGi6g1v0199500 LjG1.1_chr6 49617568 49619524 -
2 domain predictions
1 GO term
LotjaGi6g1v0222200.1
n.a. Ethylene-responsive transcription factor; TAIR: AT1G19210.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q84QC2|ERF17_ARATH Ethylene-responsive transcription factor ERF017; TrEMBL-Plants: tr|I3SZ39|I3SZ39_MEDTR Ethylene-responsive transcription factor ERF017-like protein; Found in the gene: LotjaGi6g1v0222200 LjG1.1_chr6 52692887 52694021 +
2 domain predictions
1 GO term
LotjaGi6g1v0252800.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G16770.1 ethylene-responsive element binding protein; Swiss-Prot: sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3; TrEMBL-Plants: tr|A0A140WWF2|A0A140WWF2_LOTCO AP2/ERF; Found in the gene: LotjaGi6g1v0252800 LjG1.1_chr6 56513512 56516823 +
2 domain predictions
1 GO term
LotjaGi6g1v0307900.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G18560.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q6J9Q2|ERF86_ARATH Ethylene-responsive transcription factor ERF086; TrEMBL-Plants: tr|V7C7U9|V7C7U9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0307900 LjG1.1_chr6 62515994 62517408 +
2 domain predictions
1 GO term
LotjaGi6g1v0320000.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G19790.1 related to AP2 11; Swiss-Prot: sp|Q6J9S1|RA211_ARATH Ethylene-responsive transcription factor RAP2-11; TrEMBL-Plants: tr|V7BSI8|V7BSI8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0320000 LjG1.1_chr6 63673422 63675039 +
2 domain predictions
1 GO term
LotjaGi6g1v0326300.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT4G18450.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|O49515|ERF91_ARATH Ethylene-responsive transcription factor ERF091; TrEMBL-Plants: tr|I1M1X7|I1M1X7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0326300 LjG1.1_chr6 64152680 64153776 +
2 domain predictions
1 GO term
LotjaGi6g1v0326400.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT4G17500.1 ethylene responsive element binding factor 1; Swiss-Prot: sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5; TrEMBL-Plants: tr|G7IFJ0|G7IFJ0_MEDTR Ethylene response factor; Found in the gene: LotjaGi6g1v0326400 LjG1.1_chr6 64154497 64156059 -
2 domain predictions
1 GO term
LotjaGi6g1v0329200.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G15210.1 ethylene responsive element binding factor 4; Swiss-Prot: sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4; TrEMBL-Plants: tr|A0A140WWF9|A0A140WWF9_LOTCO AP2/ERF; Found in the gene: LotjaGi6g1v0329200 LjG1.1_chr6 64395502 64397841 +
2 domain predictions
1 GO term
LotjaGi6g1v0329300.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT1G28360.1 ERF domain protein 12; Swiss-Prot: sp|Q94ID6|ERF81_ARATH Ethylene-responsive transcription factor 12; TrEMBL-Plants: tr|I3T849|I3T849_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0329300 LjG1.1_chr6 64419108 64420551 -
2 domain predictions
1 GO term
LotjaGi6g1v0351800.1
n.a. Methyl-CpG-binding domain-containing protein 8; TAIR: AT1G22310.1 methyl-CPG-binding domain 8; Swiss-Prot: sp|Q9LME6|MBD8_ARATH Methyl-CpG-binding domain-containing protein 8; TrEMBL-Plants: tr|V7BR06|V7BR06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351800 LjG1.1_chr6 66385810 66389145 +
2 domain predictions
1 GO term