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TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013026
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We have found 370 results. Now displaying 5 of 8 with 50 rows per page. This search has taken 6.180s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. Protein SLOW GREEN 1, chloroplastic; TAIR: AT3G53560.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LS48|SG1_ARATH protein SLOW GREEN 1, chloroplastic; TrEMBL-Plants: tr|A0A072U4F2|A0A072U4F2_MEDTR TPR superfamily protein; Found in the gene: LotjaGi1g1v0697300 LjG1.1_chr1 126505952 126509649 -
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|B0W429|FICD_CULQU Adenosine monophosphate-protein transferase FICD homolog; TrEMBL-Plants: tr|A0A151T5T2|A0A151T5T2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0704100 LjG1.1_chr1 127211189 127220442 +
n.a. Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400 LjG1.1_chr1 127254356 127264837 -
n.a. Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|G7KXF7|G7KXF7_MEDTR Pre-mRNA-processing factor 39; Found in the gene: LotjaGi1g1v0704400 LjG1.1_chr1 127255955 127260293 -
n.a. Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|A0A151T5W3|A0A151T5W3_CAJCA Pre-mRNA-processing factor 39; Found in the gene: LotjaGi1g1v0704400 LjG1.1_chr1 127256396 127261247 -
n.a. Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400 LjG1.1_chr1 127256396 127264223 -
n.a. Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|K7KFI9|K7KFI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704400 LjG1.1_chr1 127256396 127264223 -
n.a. Tetratricopeptide repeat protein 7A; TAIR: AT4G28600.1 no pollen germination related 2; Swiss-Prot: sp|Q66GN3|NPGR2_ARATH Protein NPGR2; TrEMBL-Plants: tr|A0A072U4B1|A0A072U4B1_MEDTR TPR 7B-like protein; Found in the gene: LotjaGi1g1v0706500 LjG1.1_chr1 127481431 127487503 -
n.a. Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300 LjG1.1_chr1 129463014 129468056 -
n.a. Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300 LjG1.1_chr1 129463648 129467605 -
n.a. Photosystem I assembly protein ycf3; TAIR: AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic; TrEMBL-Plants: tr|V7CY17|V7CY17_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0766300 LjG1.1_chr1 133932479 133937069 -
n.a. ER membrane protein complex subunit 2; TAIR: AT3G04830.1 Protein prenylyltransferase superfamily protein; Swiss-Prot: sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2; TrEMBL-Plants: tr|I3T0Q0|I3T0Q0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0779700 LjG1.1_chr1 135158269 135162711 -
n.a. Ankyrin repeat protein; TAIR: AT3G04710.1 ankyrin repeat family protein; Swiss-Prot: sp|G5E8K5|ANK3_MOUSE Ankyrin-3; TrEMBL-Plants: tr|I1NCA3|I1NCA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0782500 LjG1.1_chr1 135561234 135566370 -
n.a. Cell division cycle protein 27 like B; TAIR: AT2G20000.1 CDC27 family protein; Swiss-Prot: sp|Q8LGU6|CD27B_ARATH Cell division cycle protein 27 homolog B; TrEMBL-Plants: tr|I1N6L5|I1N6L5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0058900 LjG1.1_chr2 12281109 12305515 -
n.a. Cleavage stimulation factor subunit 3; TAIR: AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GUP1|CTF77_ARATH Cleavage stimulation factor subunit 77; TrEMBL-Plants: tr|V7C004|V7C004_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0090100 LjG1.1_chr2 26475052 26517154 -
n.a. Protein SGT1; TAIR: AT4G11260.1 phosphatase-like protein; Swiss-Prot: sp|Q9SUT5|SGT1B_ARATH Protein SGT1 homolog B; TrEMBL-Plants: tr|I3SS23|I3SS23_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0138700 LjG1.1_chr2 50696533 50703317 +
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT3G17970.1 translocon at the outer membrane of chloroplasts 64-III; Swiss-Prot: sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64; TrEMBL-Plants: tr|G7LE58|G7LE58_MEDTR Translocon at the outer membrane ofs-like protein; Found in the gene: LotjaGi2g1v0197000 LjG1.1_chr2 63187113 63194807 -
n.a. Protein KINESIN LIGHT CHAIN-RELATED 3; TAIR: AT3G27960.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LII8|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 2; TrEMBL-Plants: tr|A0A0L9VQ02|A0A0L9VQ02_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0246500 LjG1.1_chr2 71212674 71216309 -
n.a. Protein KINESIN LIGHT CHAIN-RELATED 3; TAIR: AT3G27960.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LII8|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 2; TrEMBL-Plants: tr|A0A151R9K3|A0A151R9K3_CAJCA Nephrocystin-3; Found in the gene: LotjaGi2g1v0246500 LjG1.1_chr2 71213049 71215386 -
n.a. Protein KINESIN LIGHT CHAIN-RELATED 3; TAIR: AT3G27960.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LII8|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 2; TrEMBL-Plants: tr|A0A151R9K3|A0A151R9K3_CAJCA Nephrocystin-3; Found in the gene: LotjaGi2g1v0246500 LjG1.1_chr2 71213049 71215386 -
n.a. Protein KINESIN LIGHT CHAIN-RELATED 3; TAIR: AT3G27960.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LII8|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 2; TrEMBL-Plants: tr|A0A151R9K3|A0A151R9K3_CAJCA Nephrocystin-3; Found in the gene: LotjaGi2g1v0246500 LjG1.1_chr2 71213049 71215386 -
n.a. Photosystem I assembly protein Ycf3; TAIR: AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q17A75|FICD_AEDAE Adenosine monophosphate-protein transferase FICD homolog; TrEMBL-Plants: tr|A0A1J7I785|A0A1J7I785_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0334300 LjG1.1_chr2 81039010 81040547 +
n.a. Tetratricopeptide repeat protein; TAIR: AT2G43040.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q8GZN1|NPG1_ARATH Protein NPG1; TrEMBL-Plants: tr|I1L565|I1L565_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0343600 LjG1.1_chr2 82086151 82093656 +
n.a. Tetratricopeptide repeat protein; TAIR: AT2G43040.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q8GZN1|NPG1_ARATH Protein NPG1; TrEMBL-Plants: tr|I1L565|I1L565_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0343600 LjG1.1_chr2 82087051 82093009 +
n.a. Tetratricopeptide repeat protein 13; TAIR: AT4G37460.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4JS25|SRFR1_ARATH Suppressor of RPS4-RLD 1; TrEMBL-Plants: tr|G7K3X6|G7K3X6_MEDTR Suppressor of RPS4-RLD 1/TPR domain protein; Found in the gene: LotjaGi2g1v0406300 LjG1.1_chr2 90332622 90344192 -
n.a. Tetratricopeptide repeat protein 13; TAIR: AT4G37460.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4JS25|SRFR1_ARATH Suppressor of RPS4-RLD 1; TrEMBL-Plants: tr|G7K3X6|G7K3X6_MEDTR Suppressor of RPS4-RLD 1/TPR domain protein; Found in the gene: LotjaGi2g1v0406300 LjG1.1_chr2 90333051 90344070 -
n.a. Tetratricopeptide repeat protein 13; TAIR: AT4G37460.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4JS25|SRFR1_ARATH Suppressor of RPS4-RLD 1; TrEMBL-Plants: tr|G7K3X6|G7K3X6_MEDTR Suppressor of RPS4-RLD 1/TPR domain protein; Found in the gene: LotjaGi2g1v0406300 LjG1.1_chr2 90334229 90343778 -
n.a. Tetratricopeptide repeat protein 13; TAIR: AT4G37460.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4JS25|SRFR1_ARATH Suppressor of RPS4-RLD 1; TrEMBL-Plants: tr|G7K3X6|G7K3X6_MEDTR Suppressor of RPS4-RLD 1/TPR domain protein; Found in the gene: LotjaGi2g1v0406300 LjG1.1_chr2 90334229 90343781 -
n.a. Tetratricopeptide repeat protein 1-like; TAIR: AT1G62740.1 stress-inducible protein; Swiss-Prot: sp|Q43468|HSOP1_SOYBN Hsp70-Hsp90 organizing protein 1; TrEMBL-Plants: tr|I1LGM2|I1LGM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426200 LjG1.1_chr2 92387436 92395275 +
n.a. Tetratricopeptide repeat protein 1-like; TAIR: AT1G62740.1 stress-inducible protein; Swiss-Prot: sp|Q43468|HSOP1_SOYBN Hsp70-Hsp90 organizing protein 1; TrEMBL-Plants: tr|I1LGM2|I1LGM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426200 LjG1.1_chr2 92387673 92391043 +
n.a. SGT1; TAIR: AT4G11260.1 phosphatase-like protein; Swiss-Prot: sp|Q9SUT5|SGT1B_ARATH Protein SGT1 homolog B; TrEMBL-Plants: tr|A0A1J7H3E0|A0A1J7H3E0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436700 LjG1.1_chr2 93318002 93322839 +
n.a. SGT1; TAIR: AT4G11260.1 phosphatase-like protein; Swiss-Prot: sp|Q9SUT5|SGT1B_ARATH Protein SGT1 homolog B; TrEMBL-Plants: tr|A0A1J7H3E0|A0A1J7H3E0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436700 LjG1.1_chr2 93318002 93322839 +
n.a. Tetratricopeptide repeat-containing protein; TAIR: AT1G76630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4I3Z5|SKI3_ARATH Tetratricopeptide repeat protein SKI3; TrEMBL-Plants: tr|K7K5N8|K7K5N8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0462200 LjG1.1_chr2 95547262 95569320 -
n.a. Tetratricopeptide repeat-containing protein; TAIR: AT1G76630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4I3Z5|SKI3_ARATH Tetratricopeptide repeat protein SKI3; TrEMBL-Plants: tr|K7K5N9|K7K5N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0462200 LjG1.1_chr2 95547262 95569320 -
n.a. Tetratricopeptide repeat-containing protein; TAIR: AT1G76630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4I3Z5|SKI3_ARATH Tetratricopeptide repeat protein SKI3; TrEMBL-Plants: tr|K7K5N9|K7K5N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0462200 LjG1.1_chr2 95547806 95569213 -
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q58208|Y798_METJA TPR repeat-containing protein MJ0798; TrEMBL-Plants: tr|I3S715|I3S715_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0008900 LjG1.1_chr3 1020007 1025202 -
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9BXJ9|NAA15_HUMAN N-alpha-acetyltransferase 15, NatA auxiliary subunit; TrEMBL-Plants: tr|A0A072VDQ9|A0A072VDQ9_MEDTR Amino-terminal acetyltransferase, putative; Found in the gene: LotjaGi3g1v0014700 LjG1.1_chr3 1548402 1566203 -
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|A0A1J7HQ13|A0A1J7HQ13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0014700 LjG1.1_chr3 1549181 1564867 -
n.a. Anaphase-promoting complex subunit 6; TAIR: AT1G78770.1 anaphase promoting complex 6; Swiss-Prot: sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6; TrEMBL-Plants: tr|I1KDK4|I1KDK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0041100 LjG1.1_chr3 4433456 4442958 +
n.a. TPR repeat thioredoxin TTL1-like protein; TAIR: AT1G53300.1 tetratricopetide-repeat thioredoxin-like 1; Swiss-Prot: sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1; TrEMBL-Plants: tr|V7AK33|V7AK33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0042300 LjG1.1_chr3 4523489 4527575 -
n.a. Clustered mitochondria protein homolog; TAIR: AT3G52140.2 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|F4J5S1|CLU_ARATH Clustered mitochondria protein; TrEMBL-Plants: tr|V7BVK6|V7BVK6_PHAVU Clustered mitochondria protein homolog; Found in the gene: LotjaGi3g1v0058500 LjG1.1_chr3 6148523 6164527 +
n.a. Peptidylprolyl isomerase; TAIR: AT3G25230.1 rotamase FKBP 1; Swiss-Prot: sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62; TrEMBL-Plants: tr|A0A151T0E7|A0A151T0E7_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi3g1v0089300 LjG1.1_chr3 10095197 10100134 +
n.a. Peptidylprolyl isomerase; TAIR: AT3G25230.1 rotamase FKBP 1; Swiss-Prot: sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62; TrEMBL-Plants: tr|A0A151T0E7|A0A151T0E7_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi3g1v0089300 LjG1.1_chr3 10095352 10099128 +
n.a. Clustered mitochondria protein homolog; TAIR: AT3G52140.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|F4J5S1|CLU_ARATH Clustered mitochondria protein; TrEMBL-Plants: tr|I1MJM1|I1MJM1_SOYBN Clustered mitochondria protein homolog; Found in the gene: LotjaGi3g1v0124300 LjG1.1_chr3 15200583 15219796 -
n.a. Clustered mitochondria protein homolog; TAIR: AT3G52140.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|F4J5S1|CLU_ARATH Clustered mitochondria protein; TrEMBL-Plants: tr|I1MJM1|I1MJM1_SOYBN Clustered mitochondria protein homolog; Found in the gene: LotjaGi3g1v0124300 LjG1.1_chr3 15201214 15217059 -
n.a. Clustered mitochondria protein homolog; TAIR: AT3G52140.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|F4J5S1|CLU_ARATH Clustered mitochondria protein; TrEMBL-Plants: tr|I1MJM1|I1MJM1_SOYBN Clustered mitochondria protein homolog; Found in the gene: LotjaGi3g1v0124300 LjG1.1_chr3 15201214 15217061 -
n.a. Peptidylprolyl isomerase; TAIR: AT1G56090.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A; TrEMBL-Plants: tr|I1KU07|I1KU07_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0137700 LjG1.1_chr3 17879209 17881972 +
n.a. Peptidylprolyl isomerase; TAIR: AT1G56090.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A; TrEMBL-Plants: tr|I1KU07|I1KU07_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0137700 LjG1.1_chr3 17879214 17883575 +
n.a. TPR repeat thioredoxin TTL1-like protein; TAIR: AT1G53300.1 tetratricopetide-repeat thioredoxin-like 1; Swiss-Prot: sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1; TrEMBL-Plants: tr|A0A1J7I9S5|A0A1J7I9S5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0158700 LjG1.1_chr3 21679360 21684118 -
n.a. Peptidylprolyl isomerase; TAIR: AT3G54010.1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1; TrEMBL-Plants: tr|I1JLY3|I1JLY3_SOYBN Peptidylprolyl isomerase; Found in the gene: LotjaGi3g1v0220500 LjG1.1_chr3 33218592 33231678 -