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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001806
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We have found 282 results. Now displaying 4 of 6 with 50 rows per page. This search has taken 6.764s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0517200_LC.1
n.a. Ras family protein; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A0R0F5C8|A0A0R0F5C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517200_LC LjG1.1_chr1 104026332 104031623 -
2 domain predictions
2 GO terms
LotjaGi1g1v0517200_LC.2
n.a. Ras family protein; TAIR: AT5G03520.2 RAB GTPase homolog 8C; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A1J7IN80|A0A1J7IN80_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517200_LC LjG1.1_chr1 104026332 104031623 -
2 domain predictions
2 GO terms
LotjaGi1g1v0554600.1
n.a. Ras family; TAIR: AT1G05810.2 Rab GTPase-like A5A protein; Swiss-Prot: sp|P19892|RAA5E_ARATH Ras-related protein RABA5e; TrEMBL-Plants: tr|Q40197|Q40197_LOTJA RAB11G; Found in the gene: LotjaGi1g1v0554600 LjG1.1_chr1 108681812 108684086 -
2 domain predictions
2 GO terms
LotjaGi1g1v0558900.1
n.a. Rac-like GTP-binding protein; TAIR: AT4G35020.1 RAC-like 3; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3SZA6|I3SZA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558900 LjG1.1_chr1 109105959 109109890 -
2 domain predictions
2 GO terms
LotjaGi1g1v0558900.2
n.a. Rac-like GTP-binding protein; TAIR: AT4G35020.1 RAC-like 3; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3SZA6|I3SZA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558900 LjG1.1_chr1 109107931 109109690 -
2 domain predictions
2 GO terms
LotjaGi1g1v0558900.3
n.a. Rac-like GTP-binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5; TrEMBL-Plants: tr|I3SZA6|I3SZA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558900 LjG1.1_chr1 109107931 109109690 -
2 domain predictions
2 GO terms
LotjaGi1g1v0558900.4
n.a. Rac-like GTP-binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1; TrEMBL-Plants: tr|I3SZA6|I3SZA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558900 LjG1.1_chr1 109108013 109109690 -
2 domain predictions
2 GO terms
LotjaGi1g1v0582600_LC.1
n.a. Ras-related protein-like protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A0S3SL85|A0A0S3SL85_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0582600_LC LjG1.1_chr1 112187293 112201838 +
2 domain predictions
2 GO terms
LotjaGi1g1v0582600_LC.2
n.a. Ras-related protein-like protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|A0A0S3SL85|A0A0S3SL85_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0582600_LC LjG1.1_chr1 112194427 112201935 +
2 domain predictions
2 GO terms
LotjaGi1g1v0593900.1
n.a. Ras family; TAIR: AT2G43130.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P28187|RAA5C_ARATH Ras-related protein RABA5c; TrEMBL-Plants: tr|Q08145|Q08145_PEA GTP-binding protein; Found in the gene: LotjaGi1g1v0593900 LjG1.1_chr1 113388018 113391999 -
2 domain predictions
2 GO terms
LotjaGi1g1v0601500.1
n.a. Ras-related protein Rab-25; TAIR: AT3G12160.1 RAB GTPase homolog A4D; Swiss-Prot: sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d; TrEMBL-Plants: tr|A0A0B2PK85|A0A0B2PK85_GLYSO Ras-related protein RABA4d; Found in the gene: LotjaGi1g1v0601500 LjG1.1_chr1 114659207 114661967 -
2 domain predictions
2 GO terms
LotjaGi1g1v0685600.2
n.a. Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|Q40206|Q40206_LOTJA RAB1X; Found in the gene: LotjaGi1g1v0685600 LjG1.1_chr1 125254846 125258163 +
2 domain predictions
2 GO terms
LotjaGi1g1v0685600.3
n.a. Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|Q40206|Q40206_LOTJA RAB1X; Found in the gene: LotjaGi1g1v0685600 LjG1.1_chr1 125255082 125257778 +
2 domain predictions
2 GO terms
LotjaGi1g1v0698200.1
n.a. Ras-related protein-like protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|O24466|RAE1A_ARATH Ras-related protein RABE1a; TrEMBL-Plants: tr|I3T956|I3T956_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0698200 LjG1.1_chr1 126619564 126624872 -
2 domain predictions
2 GO terms
LotjaGi1g1v0698200.2
n.a. Ras-related protein-like protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|O24466|RAE1A_ARATH Ras-related protein RABE1a; TrEMBL-Plants: tr|I3T956|I3T956_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0698200 LjG1.1_chr1 126620378 126624551 -
2 domain predictions
2 GO terms
LotjaGi1g1v0728100.1
n.a. Mitochondrial Rho GTPase; TAIR: AT3G63150.1 MIRO-related GTP-ase 2; Swiss-Prot: sp|F4J0W4|MIRO2_ARATH Mitochondrial Rho GTPase 2; TrEMBL-Plants: tr|I1N9H1|I1N9H1_SOYBN Mitochondrial Rho GTPase; Found in the gene: LotjaGi1g1v0728100 LjG1.1_chr1 129979313 129987441 -
2 domain predictions
2 GO terms
LotjaGi1g1v0795000.1
n.a. Ras-related protein, expressed; TAIR: AT1G01200.1 RAB GTPase homolog A3; Swiss-Prot: sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3; TrEMBL-Plants: tr|Q40192|Q40192_LOTJA RAB11B; Found in the gene: LotjaGi1g1v0795000 LjG1.1_chr1 136589533 136595020 +
2 domain predictions
2 GO terms
LotjaGi1g1v0795000.2
n.a. Ras-related protein, expressed; TAIR: AT1G01200.1 RAB GTPase homolog A3; Swiss-Prot: sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3; TrEMBL-Plants: tr|Q40192|Q40192_LOTJA RAB11B; Found in the gene: LotjaGi1g1v0795000 LjG1.1_chr1 136591287 136593641 +
2 domain predictions
2 GO terms
LotjaGi2g1v0118000.1
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|Q40211|Q40211_LOTJA RAB7A; Found in the gene: LotjaGi2g1v0118000 LjG1.1_chr2 43238564 43245884 -
2 domain predictions
2 GO terms
LotjaGi2g1v0118000.2
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|Q40211|Q40211_LOTJA RAB7A; Found in the gene: LotjaGi2g1v0118000 LjG1.1_chr2 43240965 43244467 -
2 domain predictions
2 GO terms
LotjaGi2g1v0118000.3
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|Q40211|Q40211_LOTJA RAB7A; Found in the gene: LotjaGi2g1v0118000 LjG1.1_chr2 43240965 43244467 -
2 domain predictions
2 GO terms
LotjaGi2g1v0118000.4
n.a. Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|Q40211|Q40211_LOTJA RAB7A; Found in the gene: LotjaGi2g1v0118000 LjG1.1_chr2 43241188 43244467 -
2 domain predictions
2 GO terms
LotjaGi2g1v0118300.1
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3S288|I3S288_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0118300 LjG1.1_chr2 43379872 43384265 -
2 domain predictions
2 GO terms
LotjaGi2g1v0198100.1
n.a. Ras-related protein, expressed; TAIR: AT1G73640.1 RAB GTPase homolog A6A; Swiss-Prot: sp|Q9C9U7|RAA6A_ARATH Ras-related protein RABA6a; TrEMBL-Plants: tr|Q40196|Q40196_LOTJA RAB11F; Found in the gene: LotjaGi2g1v0198100 LjG1.1_chr2 63298690 63314096 +
2 domain predictions
2 GO terms
LotjaGi2g1v0219200.1
n.a. Rac-like GTP binding protein; TAIR: AT4G28950.1 RHO-related protein from plants 9; Swiss-Prot: sp|O82480|RAC7_ARATH Rac-like GTP-binding protein ARAC7; TrEMBL-Plants: tr|I3SR86|I3SR86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219200 LjG1.1_chr2 67440293 67445156 -
2 domain predictions
2 GO terms
LotjaGi2g1v0219200.2
n.a. Rac-like GTP binding protein; TAIR: AT4G28950.1 RHO-related protein from plants 9; Swiss-Prot: sp|O82480|RAC7_ARATH Rac-like GTP-binding protein ARAC7; TrEMBL-Plants: tr|I3SR86|I3SR86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219200 LjG1.1_chr2 67441245 67444787 -
2 domain predictions
2 GO terms
LotjaGi2g1v0219200.3
n.a. Rac-like GTP binding protein; TAIR: AT4G28950.1 RHO-related protein from plants 9; Swiss-Prot: sp|O82480|RAC7_ARATH Rac-like GTP-binding protein ARAC7; TrEMBL-Plants: tr|I3SR86|I3SR86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0219200 LjG1.1_chr2 67441259 67444787 -
2 domain predictions
2 GO terms
LotjaGi2g1v0370100.1
n.a. Ras-related protein-like protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40218|Q40218_LOTJA RAB8D; Found in the gene: LotjaGi2g1v0370100 LjG1.1_chr2 86718185 86725935 -
2 domain predictions
2 GO terms
LotjaGi2g1v0370100.2
n.a. Ras family protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I3T5B5|I3T5B5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0370100 LjG1.1_chr2 86722633 86725578 -
2 domain predictions
2 GO terms
LotjaGi2g1v0370100.3
n.a. Ras family protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I3T5B5|I3T5B5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0370100 LjG1.1_chr2 86722641 86725645 -
2 domain predictions
2 GO terms
LotjaGi2g1v0370100.4
n.a. Ras family protein; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|I1LK56|I1LK56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0370100 LjG1.1_chr2 86722653 86725578 -
2 domain predictions
2 GO terms
LotjaGi2g1v0379300.1
n.a. Rac-like GTP-binding protein; TAIR: AT2G17800.1 RAC-like 1; Swiss-Prot: sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1; TrEMBL-Plants: tr|I3T9Y4|I3T9Y4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0379300 LjG1.1_chr2 87620286 87623316 -
2 domain predictions
2 GO terms
LotjaGi2g1v0379300.2
n.a. Rac-like GTP-binding protein; TAIR: AT2G17800.1 RAC-like 1; Swiss-Prot: sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1; TrEMBL-Plants: tr|I3T9Y4|I3T9Y4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0379300 LjG1.1_chr2 87620368 87623303 -
2 domain predictions
2 GO terms
LotjaGi2g1v0379300.3
n.a. Rac-like GTP-binding protein; TAIR: AT3G51300.1 RHO-related protein from plants 1; Swiss-Prot: sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11; TrEMBL-Plants: tr|Q8S2V3|Q8S2V3_MEDTR Rho-like GTP-binding protein; Found in the gene: LotjaGi2g1v0379300 LjG1.1_chr2 87620942 87622912 -
2 domain predictions
2 GO terms
LotjaGi3g1v0016700.1
n.a. Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|I3T7J1|I3T7J1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0016700 LjG1.1_chr3 1735823 1741691 +
2 domain predictions
2 GO terms
LotjaGi3g1v0041000.1
n.a. Ras-related protein, expressed; TAIR: AT1G16920.1 RAB GTPase homolog A1B; Swiss-Prot: sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b; TrEMBL-Plants: tr|I3S9G7|I3S9G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0041000 LjG1.1_chr3 4429545 4431857 +
2 domain predictions
2 GO terms
LotjaGi3g1v0058800.1
n.a. Ras-related protein Rab-25; TAIR: AT5G47960.1 RAB GTPase homolog A4C; Swiss-Prot: sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c; TrEMBL-Plants: tr|I3T0J2|I3T0J2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058800 LjG1.1_chr3 6183536 6187911 -
2 domain predictions
2 GO terms
LotjaGi3g1v0058800.2
n.a. Ras-related protein Rab-25; TAIR: AT5G47960.1 RAB GTPase homolog A4C; Swiss-Prot: sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c; TrEMBL-Plants: tr|I3T0J2|I3T0J2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058800 LjG1.1_chr3 6185859 6187443 -
2 domain predictions
2 GO terms
LotjaGi3g1v0067800.1
n.a. Ras family protein; TAIR: AT1G02130.1 RAS 5; Swiss-Prot: sp|P28188|RAD2A_ARATH Ras-related protein RABD2a; TrEMBL-Plants: tr|Q40204|Q40204_LOTJA RAB1D; Found in the gene: LotjaGi3g1v0067800 LjG1.1_chr3 7397257 7401054 -
2 domain predictions
2 GO terms
LotjaGi3g1v0238600.1
n.a. Ras-related protein, expressed; TAIR: AT1G06400.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D; TrEMBL-Plants: tr|V7BUN9|V7BUN9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0238600 LjG1.1_chr3 38461115 38470211 +
2 domain predictions
2 GO terms
LotjaGi3g1v0244700.1
n.a. Ras-related protein, expressed; TAIR: AT5G60860.1 RAB GTPase homolog A1F; Swiss-Prot: sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f; TrEMBL-Plants: tr|I3S9N9|I3S9N9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0244700 LjG1.1_chr3 39982324 39985343 -
2 domain predictions
2 GO terms
LotjaGi3g1v0253300.1
n.a. Ras-related protein, expressed; TAIR: AT1G06400.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q40195|RB11E_LOTJA Ras-related protein Rab11E; TrEMBL-Plants: tr|I3T8S5|I3T8S5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0253300 LjG1.1_chr3 42722110 42728578 +
2 domain predictions
2 GO terms
LotjaGi3g1v0262400_LC.1
n.a. GTP-binding nuclear protein; TAIR: AT5G20020.1 RAS-related GTP-binding nuclear protein 2; Swiss-Prot: sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2; TrEMBL-Plants: tr|A0A078HYA5|A0A078HYA5_BRANA BnaC02g09300D protein; Found in the gene: LotjaGi3g1v0262400_LC LjG1.1_chr3 48394829 48396570 +
2 domain predictions
2 GO terms
LotjaGi3g1v0280900.1
n.a. Ras-related protein Rab-8A; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40219|Q40219_LOTJA RAB8E; Found in the gene: LotjaGi3g1v0280900 LjG1.1_chr3 56201863 56206749 -
2 domain predictions
2 GO terms
LotjaGi3g1v0280900.2
n.a. Ras-related protein Rab-8A; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40219|Q40219_LOTJA RAB8E; Found in the gene: LotjaGi3g1v0280900 LjG1.1_chr3 56202800 56206403 -
2 domain predictions
2 GO terms
LotjaGi3g1v0280900.3
n.a. Ras-related protein Rab-8A; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40219|Q40219_LOTJA RAB8E; Found in the gene: LotjaGi3g1v0280900 LjG1.1_chr3 56202800 56206403 -
2 domain predictions
2 GO terms
LotjaGi3g1v0280900.4
n.a. Ras-related protein Rab-8A; TAIR: AT5G59840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40219|Q40219_LOTJA RAB8E; Found in the gene: LotjaGi3g1v0280900 LjG1.1_chr3 56202800 56206521 -
2 domain predictions
2 GO terms
LotjaGi3g1v0296100_LC.1
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B; TrEMBL-Plants: tr|A0A078EX10|A0A078EX10_BRANA GTP-binding nuclear protein; Found in the gene: LotjaGi3g1v0296100_LC LjG1.1_chr3 61352967 61353754 -
2 domain predictions
2 GO terms
LotjaGi3g1v0362600.1
n.a. Ras-related GTP-binding protein, putative; TAIR: AT5G54840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1; TrEMBL-Plants: tr|I1JJ70|I1JJ70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362600 LjG1.1_chr3 74705892 74709810 +
2 domain predictions
2 GO terms
LotjaGi3g1v0366600.1
n.a. Ras-like protein; TAIR: AT1G52280.1 RAB GTPase homolog G3D; Swiss-Prot: sp|O24461|RAB7_PRUAR Ras-related protein Rab7; TrEMBL-Plants: tr|A0A0B2SMG8|A0A0B2SMG8_GLYSO Ras-related protein Rab7; Found in the gene: LotjaGi3g1v0366600 LjG1.1_chr3 75279407 75281995 +
2 domain predictions
2 GO terms