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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006447
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We have found 199 results. Now displaying 3 of 4 with 50 rows per page. This search has taken 5.528s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0572600_LC.1
n.a. Two-component response regulator; TAIR: AT2G25180.1 response regulator 12; Swiss-Prot: sp|B8AEH1|ORR23_ORYSI Two-component response regulator ORR23; TrEMBL-Plants: tr|K7MKF2|K7MKF2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572600_LC LjG1.1_chr1 110616566 110618926 +
2 domain predictions
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LotjaGi1g1v0653900.1
n.a. MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 LjG1.1_chr1 121331742 121336469 +
2 domain predictions
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LotjaGi1g1v0653900.2
n.a. MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 LjG1.1_chr1 121331742 121336469 +
2 domain predictions
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LotjaGi1g1v0658900.1
n.a. Two-component response regulator; TAIR: AT3G10760.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SNB4|PCL1_ARATH Transcription factor LUX; TrEMBL-Plants: tr|V7CV76|V7CV76_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0658900 LjG1.1_chr1 121961600 121964323 -
2 domain predictions
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LotjaGi1g1v0658900.2
n.a. Two-component response regulator; TAIR: AT3G10760.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SNB4|PCL1_ARATH Transcription factor LUX; TrEMBL-Plants: tr|V7CV76|V7CV76_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0658900 LjG1.1_chr1 121962923 121963855 -
2 domain predictions
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LotjaGi1g1v0705400.1
n.a. Myb-like transcription factor family protein; TAIR: AT4G28610.1 phosphate starvation response 1; Swiss-Prot: sp|Q94CL7|PHR1_ARATH Protein PHOSPHATE STARVATION RESPONSE 1; TrEMBL-Plants: tr|G7KXD8|G7KXD8_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi1g1v0705400 LjG1.1_chr1 127386947 127393907 +
2 domain predictions
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LotjaGi1g1v0725500.1
n.a. Myb family transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|K7KF19|K7KF19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0725500 LjG1.1_chr1 129634963 129640546 -
2 domain predictions
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LotjaGi1g1v0725500.2
n.a. Myb family transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|K7KF19|K7KF19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0725500 LjG1.1_chr1 129634995 129640546 -
2 domain predictions
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LotjaGi1g1v0725600.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|V7CVV7|V7CVV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0725600 LjG1.1_chr1 129662236 129665134 -
2 domain predictions
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LotjaGi1g1v0784100.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|I1JRR7|I1JRR7_SOYBN PHR2; Found in the gene: LotjaGi1g1v0784100 LjG1.1_chr1 135696290 135701595 +
2 domain predictions
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LotjaGi1g1v0784100.2
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|I1JRR7|I1JRR7_SOYBN PHR2; Found in the gene: LotjaGi1g1v0784100 LjG1.1_chr1 135696459 135701154 +
2 domain predictions
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LotjaGi2g1v0006400.2
n.a. Myb family transcription factor family protein; TAIR: AT5G08520.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FNN6|SRM1_ARATH Transcription factor SRM1; TrEMBL-Plants: tr|V7C750|V7C750_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0006400 LjG1.1_chr2 2200470 2216555 +
2 domain predictions
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LotjaGi2g1v0124500.1
n.a. Myb transcription factor; TAIR: AT5G52660.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8H0W3|RVE6_ARATH Protein REVEILLE 6; TrEMBL-Plants: tr|I3SFH9|I3SFH9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0124500 LjG1.1_chr2 45734013 45749561 -
2 domain predictions
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LotjaGi2g1v0124500.2
n.a. Myb transcription factor; TAIR: AT5G52660.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8H0W3|RVE6_ARATH Protein REVEILLE 6; TrEMBL-Plants: tr|I3SFH9|I3SFH9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0124500 LjG1.1_chr2 45734620 45749547 -
2 domain predictions
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LotjaGi2g1v0183900.1
n.a. Myb transcription factor; TAIR: AT1G18330.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|B3H5A8|RVE7_ARATH Protein REVEILLE 7; TrEMBL-Plants: tr|I1MQL7|I1MQL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183900 LjG1.1_chr2 60776801 60785567 -
2 domain predictions
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LotjaGi2g1v0183900.2
n.a. Myb transcription factor; TAIR: AT1G18330.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|B3H5A8|RVE7_ARATH Protein REVEILLE 7; TrEMBL-Plants: tr|I1MQL7|I1MQL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183900 LjG1.1_chr2 60776814 60785673 -
2 domain predictions
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LotjaGi2g1v0190600.1
n.a. Myb family transcription factor-like protein; TAIR: AT5G16560.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1; TrEMBL-Plants: tr|A0A151RF88|A0A151RF88_CAJCA Putative Myb family transcription factor family; Found in the gene: LotjaGi2g1v0190600 LjG1.1_chr2 62141790 62150834 +
2 domain predictions
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LotjaGi2g1v0232600.1
n.a. MYB-like transcription factor family protein; TAIR: AT5G56840.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q9FKF9|M5162_ARATH Probable transcription factor At5g61620; TrEMBL-Plants: tr|I3SVI3|I3SVI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0232600 LjG1.1_chr2 69163398 69165221 +
2 domain predictions
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LotjaGi2g1v0280600.1
n.a. Two-component response regulator; TAIR: AT1G25550.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|D2KTV3|D2KTV3_LOTJA MYB-type transcription factor; Found in the gene: LotjaGi2g1v0280600 LjG1.1_chr2 75232879 75235716 -
2 domain predictions
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LotjaGi2g1v0302500.1
n.a. Myb family transcription factor APL; TAIR: AT1G69580.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|F4I274|PHL8_ARATH Myb family transcription factor PHL8; TrEMBL-Plants: tr|I3T9R2|I3T9R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0302500 LjG1.1_chr2 77665336 77667830 +
2 domain predictions
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LotjaGi2g1v0312200.1
n.a. MYB-like transcription factor family protein; TAIR: AT1G70000.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1; TrEMBL-Plants: tr|A0A0S3T2U3|A0A0S3T2U3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312200 LjG1.1_chr2 78702349 78705490 +
2 domain predictions
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LotjaGi2g1v0336100.1
n.a. Myb family transcription factor family protein; TAIR: AT1G32240.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2; TrEMBL-Plants: tr|V7CLW8|V7CLW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0336100 LjG1.1_chr2 81283239 81289336 -
2 domain predictions
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LotjaGi2g1v0341200.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G45580.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|C0SVS4|PHLB_ARATH Myb family transcription factor PHL11; TrEMBL-Plants: tr|V7CLJ1|V7CLJ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0341200 LjG1.1_chr2 81816599 81823692 +
2 domain predictions
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LotjaGi2g1v0398400.1
n.a. Two-component response regulator; TAIR: AT4G37180.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|V7CFC0|V7CFC0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0398400 LjG1.1_chr2 89564272 89566749 +
2 domain predictions
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LotjaGi2g1v0398400.2
n.a. Two-component response regulator; TAIR: AT4G37180.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|V7CFC0|V7CFC0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0398400 LjG1.1_chr2 89564278 89567146 +
2 domain predictions
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LotjaGi2g1v0402700_LC.1
n.a. Myb family transcription factor family protein; TAIR: AT5G08520.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FNN6|SRM1_ARATH Transcription factor SRM1; TrEMBL-Plants: tr|C6TGE3|C6TGE3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0402700_LC LjG1.1_chr2 90018844 90022677 -
2 domain predictions
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LotjaGi2g1v0402800.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G08520.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FNN6|SRM1_ARATH Transcription factor SRM1; TrEMBL-Plants: tr|V7C750|V7C750_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0402800 LjG1.1_chr2 90028719 90029490 -
2 domain predictions
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LotjaGi2g1v0416300.1
n.a. Two-component response regulator-like protein; TAIR: AT4G18020.1 CheY-like two-component responsive regulator family protein; Swiss-Prot: sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2; TrEMBL-Plants: tr|A0A0B2SEA7|A0A0B2SEA7_GLYSO Two-component response regulator-like APRR2; Found in the gene: LotjaGi2g1v0416300 LjG1.1_chr2 91400223 91408166 -
2 domain predictions
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LotjaGi2g1v0416300.2
n.a. Two-component response regulator-like protein; TAIR: AT4G18020.1 CheY-like two-component responsive regulator family protein; Swiss-Prot: sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2; TrEMBL-Plants: tr|A0A0B2SEA7|A0A0B2SEA7_GLYSO Two-component response regulator-like APRR2; Found in the gene: LotjaGi2g1v0416300 LjG1.1_chr2 91400599 91408166 -
2 domain predictions
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LotjaGi3g1v0021300.1
n.a. MYB-like transcription factor family protein; TAIR: AT3G16350.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FKF9|M5162_ARATH Probable transcription factor At5g61620; TrEMBL-Plants: tr|G7II01|G7II01_MEDTR MYB-like transcription factor family protein; Found in the gene: LotjaGi3g1v0021300 LjG1.1_chr3 2211959 2216134 +
2 domain predictions
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LotjaGi3g1v0132600.1
n.a. Myb family transcription factor APL; TAIR: AT1G79430.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SAK5|APL_ARATH Myb family transcription factor APL; TrEMBL-Plants: tr|E5L8F7|E5L8F7_LOTJA IPN2; Found in the gene: LotjaGi3g1v0132600 LjG1.1_chr3 16605614 16608311 -
2 domain predictions
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LotjaGi3g1v0176800.1
n.a. Myb family transcription factor APL; TAIR: AT3G04030.3 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SQQ9|PHL9_ARATH Myb-related protein 2; TrEMBL-Plants: tr|I1LTV8|I1LTV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0176800 LjG1.1_chr3 24592319 24596308 +
2 domain predictions
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LotjaGi3g1v0176800.2
n.a. Myb family transcription factor APL; TAIR: AT3G04030.3 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SQQ9|PHL9_ARATH Myb-related protein 2; TrEMBL-Plants: tr|I1LTV8|I1LTV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0176800 LjG1.1_chr3 24592569 24595643 +
2 domain predictions
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LotjaGi3g1v0212200.3
n.a. Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7L5T5|G7L5T5_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0212200 LjG1.1_chr3 31833713 31845131 -
2 domain predictions
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LotjaGi3g1v0240400.1
n.a. Myb family transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A072VAU2|A0A072VAU2_MEDTR Myb-like DNA-binding domain, shaqkyf class protein; Found in the gene: LotjaGi3g1v0240400 LjG1.1_chr3 38907999 38913435 +
2 domain predictions
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LotjaGi3g1v0373200_LC.1
n.a. Myb family transcription factor; TAIR: AT5G08520.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FNN6|SRM1_ARATH Transcription factor SRM1; TrEMBL-Plants: tr|V7C750|V7C750_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0373200_LC LjG1.1_chr3 76453927 76460267 -
2 domain predictions
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LotjaGi3g1v0386900.1
n.a. Myb transcription factor; TAIR: AT4G01280.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|C0SVG5|RVE5_ARATH Protein REVEILLE 5; TrEMBL-Plants: tr|I1MKS3|I1MKS3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0386900 LjG1.1_chr3 78276047 78304041 -
2 domain predictions
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LotjaGi3g1v0404800.1
n.a. Protein LHY; TAIR: AT1G01060.4 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q6R0H1|LHY_ARATH Protein LHY; TrEMBL-Plants: tr|C0SNP1|C0SNP1_SOYBN Late elongated hypocotyl and circadian clock associated-1-like protein 1; Found in the gene: LotjaGi3g1v0404800 LjG1.1_chr3 80758036 80772566 +
2 domain predictions
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LotjaGi3g1v0404800.2
n.a. Protein LHY; TAIR: AT1G01060.4 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q6R0H1|LHY_ARATH Protein LHY; TrEMBL-Plants: tr|C0SNP1|C0SNP1_SOYBN Late elongated hypocotyl and circadian clock associated-1-like protein 1; Found in the gene: LotjaGi3g1v0404800 LjG1.1_chr3 80758282 80766550 +
2 domain predictions
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LotjaGi3g1v0404800.3
n.a. Protein LHY; TAIR: AT1G01060.4 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q6R0H1|LHY_ARATH Protein LHY; TrEMBL-Plants: tr|C0SNP1|C0SNP1_SOYBN Late elongated hypocotyl and circadian clock associated-1-like protein 1; Found in the gene: LotjaGi3g1v0404800 LjG1.1_chr3 80758295 80766290 +
2 domain predictions
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LotjaGi3g1v0404800.4
n.a. Protein LHY; TAIR: AT1G01060.4 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q6R0H1|LHY_ARATH Protein LHY; TrEMBL-Plants: tr|C0SNP1|C0SNP1_SOYBN Late elongated hypocotyl and circadian clock associated-1-like protein 1; Found in the gene: LotjaGi3g1v0404800 LjG1.1_chr3 80758295 80772443 +
2 domain predictions
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LotjaGi3g1v0447200.1
n.a. Two-component response regulator-like protein; TAIR: AT2G20570.1 GBF's pro-rich region-interacting factor 1; Swiss-Prot: sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1; TrEMBL-Plants: tr|V7BXL1|V7BXL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0447200 LjG1.1_chr3 86027775 86033847 -
2 domain predictions
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LotjaGi3g1v0451100.1
n.a. Two-component response regulator-like protein; TAIR: AT2G20570.1 GBF's pro-rich region-interacting factor 1; Swiss-Prot: sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1; TrEMBL-Plants: tr|A0A1J7GFP4|A0A1J7GFP4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0451100 LjG1.1_chr3 86453709 86458877 +
2 domain predictions
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LotjaGi3g1v0490000.1
n.a. Two-component response regulator; TAIR: AT3G46640.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SNB4|PCL1_ARATH Transcription factor LUX; TrEMBL-Plants: tr|A0A0L9T7Z0|A0A0L9T7Z0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0490000 LjG1.1_chr3 90831806 90834813 +
2 domain predictions
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LotjaGi3g1v0490000.2
n.a. Two-component response regulator; TAIR: AT3G46640.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SNB4|PCL1_ARATH Transcription factor LUX; TrEMBL-Plants: tr|A0A0L9T7Z0|A0A0L9T7Z0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0490000 LjG1.1_chr3 90831830 90834954 +
2 domain predictions
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LotjaGi4g1v0003800.1
n.a. Myb family transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A5C966|A5C966_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0003800 LjG1.1_chr4 691131 695949 -
2 domain predictions
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LotjaGi4g1v0070900.1
n.a. Two-component response regulator; TAIR: AT2G03500.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|A0A072UMN0|A0A072UMN0_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi4g1v0070900 LjG1.1_chr4 8988085 8992042 +
2 domain predictions
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LotjaGi4g1v0070900.2
n.a. Two-component response regulator; TAIR: AT2G03500.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|A0A072UPI8|A0A072UPI8_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi4g1v0070900 LjG1.1_chr4 8988085 8992042 +
2 domain predictions
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LotjaGi4g1v0108500_LC.1
n.a. Two-component response regulator; TAIR: AT4G37180.3 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|A0A0L9TG55|A0A0L9TG55_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0108500_LC LjG1.1_chr4 15384318 15386770 +
2 domain predictions
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LotjaGi4g1v0108500_LC.2
n.a. Two-component response regulator; TAIR: AT4G37180.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9ZQ85|EFM_ARATH Myb family transcription factor EFM; TrEMBL-Plants: tr|A0A0L9TG55|A0A0L9TG55_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0108500_LC LjG1.1_chr4 15384318 15386770 +
2 domain predictions
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