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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011545
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We have found 320 results. Now displaying 2 of 7 with 50 rows per page. This search has taken 5.989s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1549970.1
n.a. PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Cicer arietinum] gi|502162030|ref|XP_004512366.1| chr2 24460880 24470970 +
2 domain predictions
2 GO terms
Lj2g3v1643230.1
n.a. PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine max] gi|356569961|ref|XP_003553162.1| chr2 25456755 25470290 +
2 domain predictions
2 GO terms
Lj2g3v2827810.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1 [Glycine max] gi|356540003|ref|XP_003538481.1| chr2 36907270 36912438 -
2 domain predictions
2 GO terms
Lj2g3v3059750.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine max] gi|356554094|ref|XP_003545384.1| chr2 39448373 39453073 +
2 domain predictions
2 GO terms
Lj2g3v3072950.1
n.a. PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] gi|356499332|ref|XP_003518495.1| chr2 39543183 39552511 +
2 domain predictions
2 GO terms
Lj3g3v0306870.1
n.a. DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|357454677|ref|XP_003597619.1| chr3 2250804 2255071 -
2 domain predictions
2 GO terms
Lj3g3v0323530.1
n.a. PREDICTED: eukaryotic initiation factor 4A-10-like [Glycine max] gi|356550410|ref|XP_003543580.1| chr3 2548778 2551107 -
2 domain predictions
2 GO terms
Lj3g3v0461250.1
n.a. Dead box ATP-dependent RNA helicase isoform 1 [Theobroma cacao] gi|508724624|gb|EOY16521.1| chr3 4843210 4852595 +
2 domain predictions
2 GO terms
Lj3g3v0461250.2
n.a. Dead box ATP-dependent RNA helicase isoform 2 [Theobroma cacao] gi|508724625|gb|EOY16522.1| chr3 4844508 4852595 +
2 domain predictions
2 GO terms
Lj3g3v0937880.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial-like [Glycine max] gi|356557070|ref|XP_003546841.1| chr3 11312083 11314035 +
2 domain predictions
2 GO terms
Lj3g3v0937900.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial-like [Glycine max] gi|356557070|ref|XP_003546841.1| chr3 11317458 11319643 +
2 domain predictions
2 GO terms
Lj3g3v0950560.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine max] gi|356555223|ref|XP_003545934.1| chr3 12120450 12124772 +
2 domain predictions
2 GO terms
Lj3g3v0966400.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356556951|ref|XP_003546783.1| chr3 13122548 13130884 +
2 domain predictions
2 GO terms
Lj3g3v1729090.2
n.a. PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Cicer arietinum] gi|502082664|ref|XP_004487236.1| chr3 21764766 21773482 +
2 domain predictions
2 GO terms
Lj3g3v2439650.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Cicer arietinum] gi|502179349|ref|XP_004516413.1| chr3 30045510 30050927 -
2 domain predictions
2 GO terms
Lj3g3v2664350.1
n.a. PREDICTED: eukaryotic initiation factor 4A-10-like [Glycine max] gi|356550410|ref|XP_003543580.1| chr3 32491180 32494308 +
2 domain predictions
2 GO terms
Lj4g3v0096270.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Cicer arietinum] gi|502149572|ref|XP_004507582.1| chr4 832309 834955 -
2 domain predictions
2 GO terms
Lj4g3v1440690.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like isoform X1 [Cicer arietinum] gi|502176476|ref|XP_004515873.1| chr4 22309261 22313916 +
2 domain predictions
2 GO terms
Lj4g3v1877050.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 52B-like [Glycine max] gi|356565189|ref|XP_003550826.1| chr4 25781433 25784148 +
2 domain predictions
2 GO terms
Lj4g3v2489550.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cicer arietinum] gi|502141578|ref|XP_004504551.1| chr4 33847878 33854407 -
2 domain predictions
2 GO terms
Lj4g3v2526040.1
n.a. PREDICTED: ATP-dependent DNA helicase Q-like 5-like isoform X1 [Cicer arietinum] gi|502141185|ref|XP_004504477.1| chr4 34074837 34082310 +
2 domain predictions
2 GO terms
Lj4g3v2538150.1
n.a. PREDICTED: ATP-dependent RNA helicase dhx8-like [Glycine max] gi|356512355|ref|XP_003524885.1| chr4 34125113 34134334 -
2 domain predictions
2 GO terms
Lj4g3v2692430.1
n.a. PREDICTED: ATP-dependent DNA helicase Q-like 4A-like isoform X1 [Cicer arietinum] gi|502076854|ref|XP_004485478.1| chr4 36306747 36313928 +
2 domain predictions
2 GO terms
Lj4g3v2846270.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| chr4 38097820 38102452 +
2 domain predictions
2 GO terms
Lj4g3v2917670.1
n.a. PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like [Cicer arietinum] gi|502139411|ref|XP_004503757.1| chr4 38848114 38852099 -
2 domain predictions
2 GO terms
Lj4g3v3114070.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356527870|ref|XP_003532529.1| chr4 41880596 41891192 +
2 domain predictions
2 GO terms
Lj4g3v3114070.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356527870|ref|XP_003532529.1| chr4 41880623 41891192 +
2 domain predictions
2 GO terms
Lj5g3v0539700.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Fragaria vesca subsp]. vesca] gi|470110376|ref|XP_004291460.1| chr5 6277871 6279998 +
2 domain predictions
2 GO terms
Lj5g3v0539700.2
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Cucumis sativus] gi|449441916|ref|XP_004138728.1| chr5 6277871 6279998 +
2 domain predictions
2 GO terms
Lj5g3v0747120.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Cicer arietinum] gi|502167494|ref|XP_004514158.1| chr5 10942953 10949455 -
2 domain predictions
2 GO terms
Lj5g3v0840940.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356534552|ref|XP_003535817.1| chr5 11967497 11976702 -
2 domain predictions
2 GO terms
Lj5g3v0840940.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like isoform X1 [Cicer arietinum] gi|502122238|ref|XP_004497647.1| chr5 11981978 11991306 -
2 domain predictions
2 GO terms
Lj5g3v1496740.1
n.a. ATP-dependent DNA helicase Q4 [Medicago truncatula] gi|357441723|ref|XP_003591139.1| chr5 21720168 21723469 +
2 domain predictions
2 GO terms
Lj5g3v1496740.2
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Glycine max] gi|356574959|ref|XP_003555610.1| chr5 21720168 21725651 +
2 domain predictions
2 GO terms
Lj5g3v1496740.3
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| chr5 21720168 21725651 +
2 domain predictions
2 GO terms
Lj5g3v1496740.4
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| chr5 21720168 21725651 +
2 domain predictions
2 GO terms
Lj5g3v1496810.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Glycine max] gi|356535071|ref|XP_003536072.1| chr5 21747230 21750783 +
2 domain predictions
2 GO terms
Lj5g3v1533550.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] gi|356574052|ref|XP_003555166.1| chr5 22536052 22541828 +
2 domain predictions
2 GO terms
Lj5g3v2169560.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum] gi|502120600|ref|XP_004497017.1| chr5 31162361 31172109 +
2 domain predictions
2 GO terms
Lj5g3v2169560.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum] gi|502120600|ref|XP_004497017.1| chr5 31162361 31172109 +
2 domain predictions
2 GO terms
Lj5g3v2241240.1
n.a. PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] gi|356525813|ref|XP_003531516.1| chr5 32377272 32381067 +
2 domain predictions
2 GO terms
Lj6g3v0352670.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DBP2-like [Cicer arietinum] gi|502129640|ref|XP_004500377.1| chr6 3318692 3325789 +
2 domain predictions
2 GO terms
Lj6g3v0466820.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Glycine max] gi|356568033|ref|XP_003552218.1| chr6 4526458 4531774 +
2 domain predictions
2 GO terms
Lj6g3v0622070.1
n.a. PREDICTED: helicase SKI2W-like [Glycine max] gi|356569566|ref|XP_003552970.1| chr6 6161883 6182310 +
2 domain predictions
2 GO terms
Lj6g3v0908780.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cicer arietinum] gi|502128963|ref|XP_004500137.1| chr6 8981613 8988577 -
2 domain predictions
2 GO terms
Lj6g3v0908780.2
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cicer arietinum] gi|502128963|ref|XP_004500137.1| chr6 8981613 8988577 -
2 domain predictions
2 GO terms
Lj6g3v0936970.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine max] gi|356569971|ref|XP_003553167.1| chr6 10464709 10471496 -
2 domain predictions
2 GO terms
Lj6g3v1164020.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like isoform X1 [Cicer arietinum] gi|502086117|ref|XP_004488114.1| chr6 14246480 14252361 +
2 domain predictions
2 GO terms
Lj6g3v1226300.1
n.a. PREDICTED: eukaryotic initiation factor 4A-15-like isoform 1 [Glycine max] gi|356530401|ref|XP_003533770.1| chr6 15244613 15247733 +
2 domain predictions
2 GO terms
Lj6g3v1382260.1
n.a. DH [Medicago sativa] gi|118574850|gb|ABL07003.1| chr6 16464496 16468234 -
2 domain predictions
2 GO terms