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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011598
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We have found 386 results. Now displaying 8 of 8 with 50 rows per page. This search has taken 5.738s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0199100.1
n.a. Transcription factor-related family protein; TAIR: AT2G27230.1 transcription factor-like protein; Swiss-Prot: sp|Q9XIN0|LHW_ARATH Transcription factor LHW; TrEMBL-Plants: tr|A0A0B2P6Z8|A0A0B2P6Z8_GLYSO Putative basic helix-loop-helix protein; Found in the gene: LotjaGi5g1v0199100 LjG1.1_chr5 49679041 49683994 +
2 domain predictions
1 GO term
LotjaGi5g1v0212800.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G02590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O22768|UNE12_ARATH Transcription factor UNE12; TrEMBL-Plants: tr|C0JP10|C0JP10_LOTJA Putative basic helix-loop-helix protein BHLH2; Found in the gene: LotjaGi5g1v0212800 LjG1.1_chr5 51791206 51796569 -
5 domain predictions
1 GO term
LotjaGi5g1v0212800.2
n.a. Basic helix-loop-helix transcription factor; TAIR: AT4G02590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O22768|UNE12_ARATH Transcription factor UNE12; TrEMBL-Plants: tr|C0JP10|C0JP10_LOTJA Putative basic helix-loop-helix protein BHLH2; Found in the gene: LotjaGi5g1v0212800 LjG1.1_chr5 51792207 51794012 -
5 domain predictions
1 GO term
LotjaGi5g1v0218800.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96; TrEMBL-Plants: tr|C0JP34|C0JP34_LOTJA Putative basic helix-loop-helix protein BHLH26; Found in the gene: LotjaGi5g1v0218800 LjG1.1_chr5 52498072 52500453 -
5 domain predictions
1 GO term
LotjaGi5g1v0231500.1
n.a. Transcription factor, putative; TAIR: AT1G09250.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O80482|BH149_ARATH Transcription factor bHLH149; TrEMBL-Plants: tr|I3T7S8|I3T7S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0231500 LjG1.1_chr5 53887505 53890326 +
2 domain predictions
1 GO term
LotjaGi5g1v0234300.1
n.a. Transcription factor; TAIR: AT1G09530.1 phytochrome interacting factor 3; Swiss-Prot: sp|O80536|PIF3_ARATH Transcription factor PIF3; TrEMBL-Plants: tr|A0A0B2R1U0|A0A0B2R1U0_GLYSO Transcription factor PIF3; Found in the gene: LotjaGi5g1v0234300 LjG1.1_chr5 54227575 54233508 +
5 domain predictions
1 GO term
LotjaGi5g1v0241300.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|A0A151TJ50|A0A151TJ50_CAJCA Transcription factor bHLH25; Found in the gene: LotjaGi5g1v0241300 LjG1.1_chr5 54961758 54963489 -
5 domain predictions
1 GO term
LotjaGi5g1v0268200.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|A0A1J7FMQ6|A0A1J7FMQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0268200 LjG1.1_chr5 58074065 58076985 -
5 domain predictions
1 GO term
LotjaGi5g1v0268200.2
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|A0A1J7FMQ6|A0A1J7FMQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0268200 LjG1.1_chr5 58074307 58076951 -
5 domain predictions
1 GO term
LotjaGi5g1v0269400.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G31050.6 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FYJ6|BH111_ARATH Transcription factor bHLH111; TrEMBL-Plants: tr|A0A072VPZ1|A0A072VPZ1_MEDTR BHLH transcription factor-like protein; Found in the gene: LotjaGi5g1v0269400 LjG1.1_chr5 58253496 58257821 +
3 domain predictions
1 GO term
LotjaGi5g1v0307300.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|K7LL60|K7LL60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307300 LjG1.1_chr5 62529507 62535237 -
4 domain predictions
1 GO term
LotjaGi5g1v0307300.2
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|K7LL60|K7LL60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307300 LjG1.1_chr5 62532248 62534414 -
4 domain predictions
1 GO term
LotjaGi5g1v0307400.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120; TrEMBL-Plants: tr|I1NGM8|I1NGM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307400 LjG1.1_chr5 62536113 62539991 -
5 domain predictions
1 GO term
LotjaGi5g1v0307400.2
n.a. Basic helix-loop-helix transcription factor; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|I1NGM8|I1NGM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307400 LjG1.1_chr5 62536113 62539991 -
5 domain predictions
1 GO term
LotjaGi5g1v0307500.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G51780.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|G7ID49|G7ID49_MEDTR Transcription factor; Found in the gene: LotjaGi5g1v0307500 LjG1.1_chr5 62545760 62548895 +
4 domain predictions
1 GO term
LotjaGi5g1v0322600.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G14760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84; TrEMBL-Plants: tr|C0JP15|C0JP15_LOTJA Putative basic helix-loop-helix protein BHLH10; Found in the gene: LotjaGi5g1v0322600 LjG1.1_chr5 64101876 64110563 -
5 domain predictions
1 GO term
LotjaGi5g1v0322700.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G27740.1 root hair defective 6-like 4; Swiss-Prot: sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54; TrEMBL-Plants: tr|A0A0B2PC18|A0A0B2PC18_GLYSO Transcription factor bHLH85; Found in the gene: LotjaGi5g1v0322700 LjG1.1_chr5 64114317 64116590 -
5 domain predictions
1 GO term
LotjaGi5g1v0326100.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G19500.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LT67|BH113_ARATH Transcription factor bHLH113; TrEMBL-Plants: tr|C0JP32|C0JP32_LOTJA Putative basic helix-loop-helix protein BHLH15; Found in the gene: LotjaGi5g1v0326100 LjG1.1_chr5 64363368 64365854 +
4 domain predictions
1 GO term
LotjaGi5g1v0349000_LC.1
n.a. Basic helix-loop-helix (BHLH) Transcription Factor; TAIR: AT2G16910.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES; TrEMBL-Plants: tr|I1LF47|I1LF47_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349000_LC LjG1.1_chr5 66464690 66466332 +
5 domain predictions
1 GO term
LotjaGi5g1v0364800.2
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G05805.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8H102|BH128_ARATH Transcription factor bHLH128; TrEMBL-Plants: tr|V7BAJ5|V7BAJ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0364800 LjG1.1_chr5 67947406 67962652 -
5 domain predictions
1 GO term
LotjaGi5g1v0364800.3
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G05805.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8H102|BH128_ARATH Transcription factor bHLH128; TrEMBL-Plants: tr|V7BAJ5|V7BAJ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0364800 LjG1.1_chr5 67947406 67962652 -
5 domain predictions
1 GO term
LotjaGi5g1v0364800.5
n.a. Basic helix-loop-helix transcription factor; TAIR: AT1G05805.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8H102|BH128_ARATH Transcription factor bHLH128; TrEMBL-Plants: tr|V7BAJ5|V7BAJ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0364800 LjG1.1_chr5 67956928 67962446 -
5 domain predictions
1 GO term
LotjaGi6g1v0006200.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT4G14410.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8L467|BH104_ARATH Transcription factor bHLH104; TrEMBL-Plants: tr|I1NER6|I1NER6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0006200 LjG1.1_chr6 1269442 1273928 +
5 domain predictions
1 GO term
LotjaGi6g1v0059900.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G66470.1 ROOT HAIR DEFECTIVE6; Swiss-Prot: sp|Q9C707|BH083_ARATH Transcription factor bHLH83; TrEMBL-Plants: tr|A0A1J7GMU4|A0A1J7GMU4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0059900 LjG1.1_chr6 10896235 10898035 +
5 domain predictions
1 GO term
LotjaGi6g1v0077200.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT2G40200.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9XEF0|BH051_ARATH Transcription factor bHLH51; TrEMBL-Plants: tr|I3T555|I3T555_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0077200 LjG1.1_chr6 14629115 14635448 +
5 domain predictions
1 GO term
LotjaGi6g1v0184600.1
n.a. Transcription factor; TAIR: AT2G43010.2 phytochrome interacting factor 4; Swiss-Prot: sp|Q8W2F3|PIF4_ARATH Transcription factor PIF4; TrEMBL-Plants: tr|A0A0B2R333|A0A0B2R333_GLYSO Transcription factor PIF5; Found in the gene: LotjaGi6g1v0184600 LjG1.1_chr6 47884570 47889916 -
5 domain predictions
1 GO term
LotjaGi6g1v0204800.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT2G24260.1 LJRHL1-like 1; Swiss-Prot: sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66; TrEMBL-Plants: tr|D0PX88|D0PX88_LOTJA Roothairless1/slippery; Found in the gene: LotjaGi6g1v0204800 LjG1.1_chr6 50198892 50203079 -
5 domain predictions
1 GO term
LotjaGi6g1v0230900.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G56960.2 basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|Q9LTS4|BH041_ARATH Putative transcription factor bHLH041; TrEMBL-Plants: tr|K7MBY3|K7MBY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0230900 LjG1.1_chr6 53951366 53956121 -
5 domain predictions
1 GO term
LotjaGi6g1v0234900.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G57150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35; TrEMBL-Plants: tr|C6TGE0|C6TGE0_SOYBN BHLH transcription factor; Found in the gene: LotjaGi6g1v0234900 LjG1.1_chr6 54464658 54482603 +
5 domain predictions
1 GO term
LotjaGi6g1v0234900.2
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G57150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35; TrEMBL-Plants: tr|C6TGE0|C6TGE0_SOYBN BHLH transcription factor; Found in the gene: LotjaGi6g1v0234900 LjG1.1_chr6 54464864 54481039 +
5 domain predictions
1 GO term
LotjaGi6g1v0298200.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT3G06120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9M8K6|MUTE_ARATH Transcription factor MUTE; TrEMBL-Plants: tr|A0A0S3S3P6|A0A0S3S3P6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0298200 LjG1.1_chr6 61597015 61599057 +
5 domain predictions
1 GO term
LotjaGi6g1v0298200.2
n.a. Basic helix-loop-helix transcription factor; TAIR: AT3G06120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9M8K6|MUTE_ARATH Transcription factor MUTE; TrEMBL-Plants: tr|A0A0S3S3P6|A0A0S3S3P6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0298200 LjG1.1_chr6 61597077 61598822 +
4 domain predictions
1 GO term
LotjaGi6g1v0330900.1
n.a. Basic helix-loop-helix transcription factor; TAIR: AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|I3T3N0|I3T3N0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0330900 LjG1.1_chr6 64605178 64607889 -
4 domain predictions
1 GO term
LotjaGi6g1v0343600.1
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G61660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q94JL3|BH112_ARATH Transcription factor bHLH112; TrEMBL-Plants: tr|I3SDL6|I3SDL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0343600 LjG1.1_chr6 65644019 65647486 -
3 domain predictions
1 GO term
LotjaGi6g1v0344900.2
n.a. BHLH transcription factor; TAIR: AT5G54680.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH37|ILR3_ARATH Transcription factor ILR3; TrEMBL-Plants: tr|A0A0U2I0R6|A0A0U2I0R6_9ROSA BHLH transcription factor; Found in the gene: LotjaGi6g1v0344900 LjG1.1_chr6 65745861 65749126 +
5 domain predictions
1 GO term
LotjaGi6g1v0346200.2
n.a. basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|O81348|O81348_SOYBN Symbiotic ammonium transporter; Found in the gene: LotjaGi6g1v0346200 LjG1.1_chr6 65854809 65857929 -
5 domain predictions
1 GO term