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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011990
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1969 results. Now displaying 5 of 40 with 50 rows per page. This search has taken 5.927s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0362529.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Glycine max] gi|356539325|ref|XP_003538149.1| chr0 191165075 191176419 -
2 domain predictions
1 GO term
Lj1g3v0001030.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357508205|ref|XP_003624391.1| chr1 18165 20378 -
2 domain predictions
1 GO term
Lj1g3v0001050.1
n.a. PREDICTED: tetratricopeptide repeat protein 37-like isoform X1 [Cicer arietinum] gi|502158779|ref|XP_004511280.1| chr1 22910 38176 -
3 domain predictions
1 GO term
Lj1g3v0001050.2
n.a. PREDICTED: tetratricopeptide repeat protein 37-like isoform X1 [Cicer arietinum] gi|502158779|ref|XP_004511280.1| chr1 22910 38176 -
3 domain predictions
1 GO term
Lj1g3v0001050.3
n.a. PREDICTED: tetratricopeptide repeat protein 37-like isoform X1 [Cicer arietinum] gi|502158779|ref|XP_004511280.1| chr1 28528 38176 -
3 domain predictions
1 GO term
Lj1g3v0050950.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Glycine max] gi|356540307|ref|XP_003538631.1| chr1 283997 287849 +
2 domain predictions
1 GO term
Lj1g3v0052210.1
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
2 domain predictions
1 GO term
Lj1g3v0052210.2
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
2 domain predictions
1 GO term
Lj1g3v0052210.3
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 365938 407245 -
2 domain predictions
1 GO term
Lj1g3v0084850.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] gi|356528308|ref|XP_003532746.1| chr1 743051 746279 -
3 domain predictions
1 GO term
Lj1g3v0096380.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like [Cicer arietinum] gi|502128053|ref|XP_004499920.1| chr1 887850 890157 +
3 domain predictions
1 GO term
Lj1g3v0114210.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Cicer arietinum] gi|502159071|ref|XP_004511384.1| chr1 1314027 1316553 +
2 domain predictions
1 GO term
Lj1g3v0114220.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] gi|356540339|ref|XP_003538647.1| chr1 1316709 1319408 -
3 domain predictions
1 GO term
Lj1g3v0116710.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g13270, chloroplastic-like [Glycine max] gi|356495778|ref|XP_003516750.1| chr1 1467425 1472711 -
3 domain predictions
1 GO term
Lj1g3v0117750.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g13270, chloroplastic-like [Glycine max] gi|356495778|ref|XP_003516750.1| chr1 1479672 1483456 +
3 domain predictions
1 GO term
Lj1g3v0131180.1
n.a. PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Cicer arietinum] gi|502159156|ref|XP_004511412.1| chr1 1726908 1731112 -
2 domain predictions
1 GO term
Lj1g3v0173670.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357490167|ref|XP_003615371.1| chr1 1948962 1952770 -
2 domain predictions
1 GO term
Lj1g3v0295770.1
n.a. PREDICTED: tetratricopeptide repeat protein 37-like [Glycine max] gi|356507317|ref|XP_003522414.1| chr1 3435633 3441139 -
3 domain predictions
1 GO term
Lj1g3v0295770.2
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|356516597|ref|XP_003526980.1| chr1 3435633 3441185 -
3 domain predictions
1 GO term
Lj1g3v0318660.1
n.a. pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15222662|ref|NP_176613.1| chr1 3885663 3888903 +
2 domain predictions
1 GO term
Lj1g3v0437870.1
n.a. PREDICTED: general transcription factor 3C polypeptide 3-like [Glycine max] gi|356544401|ref|XP_003540640.1| chr1 5933105 5939896 +
3 domain predictions
1 GO term
Lj1g3v0525410.1
n.a. n.a. chr1 6594863 6597432 +
2 domain predictions
1 GO term
Lj1g3v0525420.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g61400-like [Cicer arietinum] gi|502128589|ref|XP_004500011.1| chr1 6597615 6600498 -
2 domain predictions
1 GO term
Lj1g3v0579610.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial-like [Glycine max] gi|356524110|ref|XP_003530675.1| chr1 7186526 7188582 +
3 domain predictions
1 GO term
Lj1g3v0579730.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Glycine max] gi|356519174|ref|XP_003528249.1| chr1 7251156 7254534 -
2 domain predictions
1 GO term
Lj1g3v0662090.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Glycine max] gi|356498381|ref|XP_003518031.1| chr1 8612641 8615935 +
3 domain predictions
1 GO term
Lj1g3v0672670.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cicer arietinum] gi|502087444|ref|XP_004488535.1| chr1 8729230 8732578 +
2 domain predictions
1 GO term
Lj1g3v0764540.1
n.a. PREDICTED: histone-lysine N-methyltransferase ASHR1-like isoform X2 [Cicer arietinum] gi|502130281|ref|XP_004500596.1| chr1 9928583 9940744 +
3 domain predictions
1 GO term
Lj1g3v0764540.2
n.a. PREDICTED: histone-lysine N-methyltransferase ASHR1-like isoform X1 [Cicer arietinum] gi|502130279|ref|XP_004500595.1| chr1 9928583 9940744 +
3 domain predictions
1 GO term
Lj1g3v0874360.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like isoform X1 [Cicer arietinum] gi|502135993|ref|XP_004502524.1| chr1 11225414 11228446 +
3 domain predictions
1 GO term
Lj1g3v0911980.1
n.a. Pentatricopeptide repeat protein [Medicago truncatula] gi|357518009|ref|XP_003629293.1| chr1 11544994 11547111 +
2 domain predictions
1 GO term
Lj1g3v0911990.1
n.a. Pentatricopeptide repeat protein [Medicago truncatula] gi|357518009|ref|XP_003629293.1| chr1 11544994 11547711 +
2 domain predictions
1 GO term
Lj1g3v0912010.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial-like [Cicer arietinum] gi|502137317|ref|XP_004503044.1| chr1 11549705 11552060 +
2 domain predictions
1 GO term
Lj1g3v0984410.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] gi|356516061|ref|XP_003526715.1| chr1 12513415 12516171 +
2 domain predictions
1 GO term
Lj1g3v0985630.1
n.a. PREDICTED: kinesin light chain 4-like isoform X2 [Cicer arietinum] gi|502136407|ref|XP_004502675.1| chr1 12593935 12598228 -
4 domain predictions
1 GO term
Lj1g3v1092730.1
n.a. SET and MYND domain-containing protein [Medicago truncatula] gi|357464329|ref|XP_003602446.1| chr1 13841994 13855383 +
3 domain predictions
1 GO term
Lj1g3v1147560.1
n.a. Pentatricopeptide repeat protein [Medicago truncatula] gi|357516795|ref|XP_003628686.1| chr1 14226988 14230167 +
2 domain predictions
1 GO term
Lj1g3v1221310.1
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508700415|gb|EOX92311.1| chr1 14886038 14890529 -
3 domain predictions
1 GO term
Lj1g3v1221310.2
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508700415|gb|EOX92311.1| chr1 14886647 14890529 -
3 domain predictions
1 GO term
Lj1g3v1221310.3
n.a. Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao] gi|508700416|gb|EOX92312.1| chr1 14887871 14890529 -
3 domain predictions
1 GO term
Lj1g3v1290390.1
n.a. PREDICTED: protein TONSOKU-like [Glycine max] gi|356528540|ref|XP_003532859.1| chr1 15404600 15413979 -
3 domain predictions
1 GO term
Lj1g3v1318090.1
n.a. PREDICTED: tetratricopeptide repeat protein 1-like [Cicer arietinum] gi|502124508|ref|XP_004498557.1| chr1 15905000 15914876 -
3 domain predictions
1 GO term
Lj1g3v1341640.1
n.a. n.a. chr1 16074422 16081242 +
3 domain predictions
1 GO term
Lj1g3v1374570.1
n.a. pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|15240032|ref|NP_196258.1| chr1 16531570 16534138 -
2 domain predictions
1 GO term
Lj1g3v1384110.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356521481|ref|XP_003529384.1| chr1 16802248 16806591 -
3 domain predictions
1 GO term
Lj1g3v1385260.1
n.a. PREDICTED: tetratricopeptide repeat protein 27 homolog [Cicer arietinum] gi|502137243|ref|XP_004503019.1| chr1 16871404 16882259 -
3 domain predictions
1 GO term
Lj1g3v1386420.1
n.a. pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297810955|ref|XP_002873361.1| chr1 16915111 16918232 +
2 domain predictions
1 GO term
Lj1g3v1386470.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] gi|356518836|ref|XP_003528083.1| chr1 16954963 16956891 -
2 domain predictions
1 GO term
Lj1g3v1526210.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like isoform X2 [Cicer arietinum] gi|502133180|ref|XP_004501675.1| chr1 18239975 18241830 +
3 domain predictions
1 GO term
Lj1g3v1548780.1
n.a. Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508723577|gb|EOY15474.1| chr1 18527616 18529300 -
3 domain predictions
1 GO term