Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011993
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 197 results. Now displaying 3 of 4 with 50 rows per page. This search has taken 5.474s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460332 99464115 +
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460373 99464115 +
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC LjG1.1_chr1 112948086 112952014 +
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC LjG1.1_chr1 112948149 112952001 +
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G13200.1 GRAM domain family protein; Swiss-Prot: sp|Q9LYV6|GEML5_ARATH GEM-like protein 5; TrEMBL-Plants: tr|I3TA12|I3TA12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0631000 LjG1.1_chr1 118455156 118460039 -
n.a. mRNA-decapping enzyme-like protein; TAIR: AT1G08370.1 decapping 1; Swiss-Prot: sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein; TrEMBL-Plants: tr|A0A151S1B1|A0A151S1B1_CAJCA mRNA-decapping enzyme-like protein; Found in the gene: LotjaGi1g1v0733900 LjG1.1_chr1 130728770 130735223 +
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 LjG1.1_chr2 22249439 22255186 +
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A0L9VP68|A0A0L9VP68_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 LjG1.1_chr2 22249879 22253455 +
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 LjG1.1_chr2 22249879 22254544 +
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A0S3TAW6|A0A0S3TAW6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48800529 48812331 -
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48801389 48810020 -
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802245 48810028 -
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7K743|K7K743_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802439 48810020 -
n.a. Myotubularin; TAIR: AT3G10550.1 Myotubularin-like phosphatases II superfamily; Swiss-Prot: sp|F4J3T8|MYTM1_ARATH Phosphatidylinositol-3-phosphatase myotubularin-1; TrEMBL-Plants: tr|V7BH90|V7BH90_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0157200 LjG1.1_chr2 55643415 55657924 -
n.a. GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G23370.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8; TrEMBL-Plants: tr|G7KKC8|G7KKC8_MEDTR GRAM domain protein/ABA-responsive-like protein; Found in the gene: LotjaGi2g1v0178700 LjG1.1_chr2 60020592 60023374 -
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 LjG1.1_chr2 72298284 72304237 -
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A151S4Y7|A0A151S4Y7_CAJCA FACT complex subunit SSRP1; Found in the gene: LotjaGi2g1v0256800 LjG1.1_chr2 72298562 72304104 -
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A0R0KM01|A0A0R0KM01_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 LjG1.1_chr2 72298894 72303480 -
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 LjG1.1_chr2 72298894 72303480 -
n.a. ENHANCED DISEASE RESISTANCE 2; TAIR: AT4G19040.1 ENHANCED DISEASE RESISTANCE 2; Swiss-Prot: sp|F4JSE7|EDR2_ARATH Protein ENHANCED DISEASE RESISTANCE 2; TrEMBL-Plants: tr|A0A0L9UR75|A0A0L9UR75_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0341500 LjG1.1_chr2 81850736 81864885 -
n.a. ENHANCED DISEASE RESISTANCE 2; TAIR: AT4G19040.1 ENHANCED DISEASE RESISTANCE 2; Swiss-Prot: sp|F4JSE7|EDR2_ARATH Protein ENHANCED DISEASE RESISTANCE 2; TrEMBL-Plants: tr|A0A0L9UR75|A0A0L9UR75_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0341500 LjG1.1_chr2 81852637 81864393 -
n.a. ENHANCED DISEASE RESISTANCE 2; TAIR: AT4G19040.1 ENHANCED DISEASE RESISTANCE 2; Swiss-Prot: sp|F4JSE7|EDR2_ARATH Protein ENHANCED DISEASE RESISTANCE 2; TrEMBL-Plants: tr|A0A0L9UR75|A0A0L9UR75_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0341500 LjG1.1_chr2 81852842 81864393 -
n.a. Kinesin-like protein; TAIR: AT5G65930.2 kinesin-like calmodulin-binding protein (ZWICHEL); Swiss-Prot: sp|Q7XPJ0|KN14I_ORYSJ Kinesin-like protein KIN-14I; TrEMBL-Plants: tr|I1J891|I1J891_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351000 LjG1.1_chr2 82734093 82743835 +
n.a. Kinesin-like protein; TAIR: AT5G65930.2 kinesin-like calmodulin-binding protein (ZWICHEL); Swiss-Prot: sp|Q7XPJ0|KN14I_ORYSJ Kinesin-like protein KIN-14I; TrEMBL-Plants: tr|I1J891|I1J891_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351000 LjG1.1_chr2 82734941 82743560 +
n.a. Pleckstrin (PH) domain-containing protein isoform 2; TAIR: AT4G17140.3 pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C; TrEMBL-Plants: tr|G7JYP4|G7JYP4_MEDTR Vacuolar protein sorting protein; Found in the gene: LotjaGi2g1v0417400 LjG1.1_chr2 91545297 91593826 -
n.a. Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|A0A061G427|A0A061G427_THECC Pleckstrin domain superfamily protein isoform 1; Found in the gene: LotjaGi2g1v0431100 LjG1.1_chr2 92800416 92805314 -
n.a. Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|A0A061G427|A0A061G427_THECC Pleckstrin domain superfamily protein isoform 1; Found in the gene: LotjaGi2g1v0431100 LjG1.1_chr2 92800560 92804663 -
n.a. Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|I1LGI3|I1LGI3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0431100 LjG1.1_chr2 92800560 92805236 -
n.a. Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|I1LGI3|I1LGI3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0431100 LjG1.1_chr2 92800882 92804646 -
n.a. Pleckstrin-like (PH) domain protein; TAIR: AT4G23895.1 Pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|P71404|CLPB_HELPY Chaperone protein ClpB; TrEMBL-Plants: tr|I3SRK6|I3SRK6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0441300 LjG1.1_chr2 93762946 93766578 -
n.a. Pleckstrin-like (PH) domain protein; TAIR: AT4G23895.1 Pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|P71404|CLPB_HELPY Chaperone protein ClpB; TrEMBL-Plants: tr|I3SRK6|I3SRK6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0441300 LjG1.1_chr2 93763366 93765293 -
n.a. Ran-binding protein 1 domain-containing; TAIR: AT1G52380.1 NUP50 (Nucleoporin 50 kDa) protein; Swiss-Prot: sp|Q9C829|NU50A_ARATH Nuclear pore complex protein NUP50A; TrEMBL-Plants: tr|A0A0B2NU93|A0A0B2NU93_GLYSO E3 SUMO-protein ligase RanBP2; Found in the gene: LotjaGi3g1v0015500 LjG1.1_chr3 1638046 1641772 -
n.a. Dynamin homolog; TAIR: AT1G59610.1 dynamin-like 3; Swiss-Prot: sp|Q9LQ55|DRP2B_ARATH Dynamin-2B; TrEMBL-Plants: tr|Q9SDX4|Q9SDX4_ASTSI Dynamin homolog; Found in the gene: LotjaGi3g1v0054800 LjG1.1_chr3 5716872 5729123 -
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TWG7|A0A072TWG7_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288362 7302896 +
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TJX9|A0A072TJX9_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288362 7302896 +
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TJX9|A0A072TJX9_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288374 7302557 +
n.a. GRAM domain family protein; TAIR: AT1G02120.1 GRAM domain family protein; Swiss-Prot: sp|F4HVW5|VAD1_ARATH Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic; TrEMBL-Plants: tr|A0A072TWG7|A0A072TWG7_MEDTR PH-GRAM1-TCB1D9-TCB1D9B domain protein; Found in the gene: LotjaGi3g1v0067300 LjG1.1_chr3 7288375 7302383 +
n.a. Pleckstrin-like (PH) and lipid-binding START domain protein; TAIR: AT2G28320.1 Pleckstrin homology (PH) and lipid-binding START domains-containing protein; Swiss-Prot: sp|F4JSE7|EDR2_ARATH Protein ENHANCED DISEASE RESISTANCE 2; TrEMBL-Plants: tr|A0A151S5D4|A0A151S5D4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0164200 LjG1.1_chr3 22335591 22347486 -
n.a. Pleckstrin-like (PH) and lipid-binding START domain protein; TAIR: AT2G28320.1 Pleckstrin homology (PH) and lipid-binding START domains-containing protein; Swiss-Prot: sp|F4JSE7|EDR2_ARATH Protein ENHANCED DISEASE RESISTANCE 2; TrEMBL-Plants: tr|A0A151S5D4|A0A151S5D4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0164200 LjG1.1_chr3 22335591 22347486 -
n.a. mRNA-decapping enzyme-like protein; TAIR: AT1G08370.1 decapping 1; Swiss-Prot: sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein; TrEMBL-Plants: tr|A0A1J7I5L7|A0A1J7I5L7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0180000 LjG1.1_chr3 25051850 25060075 +
n.a. Vacuolar protein sorting-associated protein 36; TAIR: AT5G04920.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36; TrEMBL-Plants: tr|V7AJ01|V7AJ01_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0303100 LjG1.1_chr3 63245138 63253073 -
n.a. Vacuolar protein sorting-associated protein 36; TAIR: AT5G04920.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36; TrEMBL-Plants: tr|V7AJ01|V7AJ01_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0303100 LjG1.1_chr3 63246919 63253069 -
n.a. Vacuolar protein sorting-associated protein 36; TAIR: AT5G04920.1 EAP30/Vps36 family protein; Swiss-Prot: sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36; TrEMBL-Plants: tr|V7AJ01|V7AJ01_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0303100 LjG1.1_chr3 63247695 63252868 -
n.a. Adaptin ear-binding coat-associated protein 1; TAIR: AT3G58600.1 Adaptin ear-binding coat-associated protein 1 NECAP-1; Swiss-Prot: sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2; TrEMBL-Plants: tr|I1LUL7|I1LUL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0450100 LjG1.1_chr3 86369824 86373797 -
n.a. Dynamin family protein; TAIR: AT1G59610.1 dynamin-like 3; Swiss-Prot: sp|Q9LQ55|DRP2B_ARATH Dynamin-2B; TrEMBL-Plants: tr|I1MQT0|I1MQT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0001200 LjG1.1_chr4 232251 267769 +
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|I1KNM4|I1KNM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005000 LjG1.1_chr4 829474 836291 -
n.a. C2 and GRAM domain-containing protein; TAIR: AT1G03370.1 C2 calcium/lipid-binding and GRAM domain containing protein; Swiss-Prot: sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370; TrEMBL-Plants: tr|I1KNM4|I1KNM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005000 LjG1.1_chr4 829550 842552 -
n.a. Dynamin, putative; TAIR: AT4G33650.1 dynamin-related protein 3A; Swiss-Prot: sp|Q8S944|DRP3A_ARATH Dynamin-related protein 3A; TrEMBL-Plants: tr|K7L2I2|K7L2I2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040300 LjG1.1_chr4 4757486 4766768 +
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K882|K7K882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8690588 8699044 +
n.a. C2 domain-containing protein / GRAM domain-containing protein; TAIR: AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein; Swiss-Prot: sp|Q8W4D4|BAGP1_ARATH BAG-associated GRAM protein 1; TrEMBL-Plants: tr|K7K881|K7K881_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0068800 LjG1.1_chr4 8691301 8698341 +