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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006553
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 129 results. Now displaying 2 of 3 with 50 rows per page. This search has taken 5.907s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v0539600.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like [Cicer arietinum] gi|502124962|ref|XP_004498740.1| chr5 6233716 6234353 -
2 domain predictions
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Lj5g3v0747050.1
n.a. PREDICTED: F-box protein At3g58530-like [Glycine max] gi|356530677|ref|XP_003533907.1| chr5 10912576 10923513 -
2 domain predictions
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Lj5g3v1669330.1
n.a. PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Cicer arietinum] gi|502117884|ref|XP_004495993.1| chr5 23819935 23822708 +
2 domain predictions
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Lj5g3v2180000.1
n.a. Ein3-binding f-box protein [Medicago truncatula] gi|357436981|ref|XP_003588766.1| chr5 31423430 31424117 +
2 domain predictions
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Lj5g3v2258370.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357444831|ref|XP_003592693.1| chr5 32770846 32774064 -
2 domain predictions
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Lj6g3v0437160.2
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr6 4173408 4174601 -
2 domain predictions
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Lj6g3v0437170.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr6 4176362 4182360 -
2 domain predictions
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Lj6g3v0437170.2
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357439753|ref|XP_003590154.1| chr6 4180591 4182360 -
2 domain predictions
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Lj6g3v0437300.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr6 4220181 4223345 -
2 domain predictions
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Lj6g3v0437300.2
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr6 4220181 4223368 -
2 domain predictions
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Lj6g3v1078230.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357447213|ref|XP_003593882.1| chr6 12723300 12725626 -
2 domain predictions
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Lj6g3v1187500.1
n.a. PREDICTED: F-box/LRR-repeat protein 13-like [Cicer arietinum] gi|502165232|ref|XP_004513482.1| chr6 14595142 14600113 -
2 domain predictions
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Lj6g3v1900330.1
n.a. PREDICTED: F-box/LRR-repeat protein 4-like [Cicer arietinum] gi|502078921|ref|XP_004486096.1| chr6 21253297 21259303 +
2 domain predictions
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Lj6g3v1946500.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr6 22279363 22282049 -
2 domain predictions
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LotjaGi1g1v0081000.1
n.a. Coronatine-insensitive protein 1; TAIR: AT2G39940.1 RNI-like superfamily protein; Swiss-Prot: sp|O04197|COI1_ARATH Coronatine-insensitive protein 1; TrEMBL-Plants: tr|A0A0L9UW22|A0A0L9UW22_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0081000 LjG1.1_chr1 11708059 11712678 +
2 domain predictions
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LotjaGi1g1v0081000.2
n.a. Coronatine-insensitive 1-like protein; TAIR: AT2G39940.1 RNI-like superfamily protein; Swiss-Prot: sp|O04197|COI1_ARATH Coronatine-insensitive protein 1; TrEMBL-Plants: tr|A0A1J7GQB4|A0A1J7GQB4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0081000 LjG1.1_chr1 11708624 11712220 +
2 domain predictions
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LotjaGi1g1v0139900.1
n.a. Transport inhibitor response 1-like protein; TAIR: AT5G49980.1 auxin F-box protein 5; Swiss-Prot: sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein; TrEMBL-Plants: tr|G7KBF5|G7KBF5_MEDTR Transport inhibitor response protein, putative; Found in the gene: LotjaGi1g1v0139900 LjG1.1_chr1 22967923 22972183 +
2 domain predictions
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LotjaGi1g1v0271500.1
n.a. F-box family protein; TAIR: AT1G21410.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A; TrEMBL-Plants: tr|A0A0B2SHG6|A0A0B2SHG6_GLYSO F-box protein SKP2B; Found in the gene: LotjaGi1g1v0271500 LjG1.1_chr1 66291805 66297253 +
2 domain predictions
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LotjaGi1g1v0271500.2
n.a. F-box family protein; TAIR: AT1G21410.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A; TrEMBL-Plants: tr|A0A0B2SHG6|A0A0B2SHG6_GLYSO F-box protein SKP2B; Found in the gene: LotjaGi1g1v0271500 LjG1.1_chr1 66293138 66296618 +
2 domain predictions
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LotjaGi1g1v0271500.3
n.a. F-box family protein; TAIR: AT1G21410.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A; TrEMBL-Plants: tr|A0A0B2SHG6|A0A0B2SHG6_GLYSO F-box protein SKP2B; Found in the gene: LotjaGi1g1v0271500 LjG1.1_chr1 66293193 66296618 +
2 domain predictions
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LotjaGi1g1v0383800.1
n.a. F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|I1JUC8|I1JUC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383800 LjG1.1_chr1 86712944 86716738 -
2 domain predictions
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LotjaGi1g1v0496800.1
n.a. Protein ARABIDILLO 1; TAIR: AT2G44900.1 ARABIDILLO-1; Swiss-Prot: sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1; TrEMBL-Plants: tr|A0A0B2QL67|A0A0B2QL67_GLYSO Protein ARABIDILLO 1; Found in the gene: LotjaGi1g1v0496800 LjG1.1_chr1 101210937 101228331 -
2 domain predictions
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LotjaGi1g1v0496800.2
n.a. Protein ARABIDILLO 1; TAIR: AT2G44900.1 ARABIDILLO-1; Swiss-Prot: sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1; TrEMBL-Plants: tr|A0A0B2QL67|A0A0B2QL67_GLYSO Protein ARABIDILLO 1; Found in the gene: LotjaGi1g1v0496800 LjG1.1_chr1 101211759 101228165 -
2 domain predictions
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LotjaGi1g1v0496800.3
n.a. Protein ARABIDILLO 1; TAIR: AT2G44900.1 ARABIDILLO-1; Swiss-Prot: sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1; TrEMBL-Plants: tr|A0A0B2QL67|A0A0B2QL67_GLYSO Protein ARABIDILLO 1; Found in the gene: LotjaGi1g1v0496800 LjG1.1_chr1 101212066 101227526 -
2 domain predictions
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LotjaGi1g1v0589500.1
n.a. F-box/LRR-repeat protein, putative; TAIR: AT2G06040.1 F-box/LRR protein; Swiss-Prot: sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2; TrEMBL-Plants: tr|I1MSA9|I1MSA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589500 LjG1.1_chr1 112965289 112969348 +
2 domain predictions
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LotjaGi1g1v0611000.1
n.a. F-box/LRR-repeat protein, putative; TAIR: AT5G40470.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A072TZ55|A0A072TZ55_MEDTR F-box/LRR protein; Found in the gene: LotjaGi1g1v0611000 LjG1.1_chr1 115587358 115589594 +
2 domain predictions
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LotjaGi1g1v0631200.1
n.a. Transport inhibitor response 1 protein; TAIR: AT1G12820.1 auxin signaling F-box 3; Swiss-Prot: sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3; TrEMBL-Plants: tr|A0A151SK39|A0A151SK39_CAJCA Protein AUXIN SIGNALING F-BOX 3; Found in the gene: LotjaGi1g1v0631200 LjG1.1_chr1 118466263 118476794 -
2 domain predictions
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LotjaGi1g1v0678600.1
n.a. BTB/POZ domain-containing protein FBL11; TAIR: AT2G36370.1 ubiquitin-protein ligase; Swiss-Prot: sp|Q8S8F2|FBL11_ARATH BTB/POZ domain-containing protein FBL11; TrEMBL-Plants: tr|K7KFZ3|K7KFZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0678600 LjG1.1_chr1 124483303 124495383 +
2 domain predictions
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LotjaGi1g1v0745700.1
n.a. Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1; TrEMBL-Plants: tr|I1NB13|I1NB13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0745700 LjG1.1_chr1 131897694 131901419 -
2 domain predictions
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LotjaGi2g1v0383500.1
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A072V906|A0A072V906_MEDTR F-box/LRR protein; Found in the gene: LotjaGi2g1v0383500 LjG1.1_chr2 87992350 87996972 -
2 domain predictions
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LotjaGi2g1v0403000.1
n.a. F-box protein; TAIR: AT5G67140.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FH99|FB302_ARATH F-box protein At5g67140; TrEMBL-Plants: tr|I3SRZ0|I3SRZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0403000 LjG1.1_chr2 90039967 90042056 +
2 domain predictions
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LotjaGi2g1v0403000.2
n.a. F-box protein; TAIR: AT5G67140.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FH99|FB302_ARATH F-box protein At5g67140; TrEMBL-Plants: tr|I3SRZ0|I3SRZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0403000 LjG1.1_chr2 90040122 90041932 +
2 domain predictions
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LotjaGi2g1v0442400.1
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A072V906|A0A072V906_MEDTR F-box/LRR protein; Found in the gene: LotjaGi2g1v0442400 LjG1.1_chr2 93818952 93821847 -
2 domain predictions
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LotjaGi2g1v0442500.1
n.a. F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A072V906|A0A072V906_MEDTR F-box/LRR protein; Found in the gene: LotjaGi2g1v0442500 LjG1.1_chr2 93832320 93834296 -
2 domain predictions
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LotjaGi3g1v0005600.1
n.a. F-box/LRR protein; TAIR: AT1G80570.2 RNI-like superfamily protein; Swiss-Prot: sp|Q3EC97|FBL14_ARATH F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A1J7HBP2|A0A1J7HBP2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0005600 LjG1.1_chr3 721390 723723 -
2 domain predictions
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LotjaGi3g1v0005600.2
n.a. F-box/LRR protein; TAIR: AT1G80570.2 RNI-like superfamily protein; Swiss-Prot: sp|Q3EC97|FBL14_ARATH F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A1J7HBP2|A0A1J7HBP2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0005600 LjG1.1_chr3 721796 723279 -
2 domain predictions
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LotjaGi3g1v0007200.1
n.a. Leucine-rich repeat (LRR) family protein; TAIR: AT1G15740.1 Leucine-rich repeat family protein; Swiss-Prot: sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A151SPW9|A0A151SPW9_CAJCA F-box/LRR-repeat protein 14; Found in the gene: LotjaGi3g1v0007200 LjG1.1_chr3 857565 865972 -
2 domain predictions
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LotjaGi3g1v0201900.1
n.a. F-box/LRR-repeat protein; TAIR: AT5G01720.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3; TrEMBL-Plants: tr|A0A1J7HEU2|A0A1J7HEU2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0201900 LjG1.1_chr3 29439284 29444128 -
2 domain predictions
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LotjaGi3g1v0201900.2
n.a. F-box/LRR-repeat protein; TAIR: AT5G01720.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3; TrEMBL-Plants: tr|I1JL30|I1JL30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0201900 LjG1.1_chr3 29440279 29442082 -
2 domain predictions
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LotjaGi3g1v0351900.1
n.a. F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0351900 LjG1.1_chr3 73131303 73133395 +
2 domain predictions
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LotjaGi3g1v0352000.1
n.a. F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0352000 LjG1.1_chr3 73160037 73165196 +
2 domain predictions
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LotjaGi3g1v0352000.2
n.a. F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0352000 LjG1.1_chr3 73160085 73164027 +
2 domain predictions
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LotjaGi3g1v0352200.1
n.a. F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A151RJU6|A0A151RJU6_CAJCA F-box/LRR-repeat protein 4; Found in the gene: LotjaGi3g1v0352200 LjG1.1_chr3 73186113 73188792 +
2 domain predictions
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LotjaGi3g1v0353800.1
n.a. F-box/LRR-repeat protein; TAIR: AT1G15740.1 Leucine-rich repeat family protein; Swiss-Prot: sp|A2RT62|FXL16_MOUSE F-box/LRR-repeat protein 16; TrEMBL-Plants: tr|I1KGY2|I1KGY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353800 LjG1.1_chr3 73485681 73495542 -
2 domain predictions
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LotjaGi3g1v0376200.4
n.a. F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376200 LjG1.1_chr3 76890719 76896271 +
2 domain predictions
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LotjaGi3g1v0376200.5
n.a. F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376200 LjG1.1_chr3 76890900 76896266 +
2 domain predictions
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LotjaGi3g1v0551900.1
n.a. F-box-like protein; TAIR: AT5G07670.1 RNI-like superfamily protein; Swiss-Prot: sp|Q8VYT5|FB254_ARATH F-box protein At5g07670; TrEMBL-Plants: tr|A0A072UUB0|A0A072UUB0_MEDTR F-box-like protein; Found in the gene: LotjaGi3g1v0551900 LjG1.1_chr3 96891393 96894896 -
2 domain predictions
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LotjaGi4g1v0048600.1
n.a. Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600; TrEMBL-Plants: tr|I1KQQ6|I1KQQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0048600 LjG1.1_chr4 5895926 5901766 -
2 domain predictions
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LotjaGi4g1v0100800.1
n.a. F-box family protein; TAIR: AT5G67250.1 SKP1/ASK1-interacting protein 2; Swiss-Prot: sp|Q9FE83|SKIP2_ARATH F-box protein SKIP2; TrEMBL-Plants: tr|K7KP92|K7KP92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0100800 LjG1.1_chr4 13837385 13839509 +
2 domain predictions
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LotjaGi4g1v0271800.1
n.a. F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|A0A1J7GHQ3|A0A1J7GHQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271800 LjG1.1_chr4 63854997 63859290 +
2 domain predictions
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